Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilI   Type   Machinery gene
Locus tag   NDQ70_RS02665 Genome accession   NZ_CP098534
Coordinates   517918..518532 (+) Length   204 a.a.
NCBI ID   WP_012503479.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10525     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512918..523532
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDQ70_RS02640 (NDQ70_06905) - 513416..513748 (+) 333 WP_003687908.1 hypothetical protein -
  NDQ70_RS02645 (NDQ70_06900) - 514078..514587 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDQ70_RS02650 (NDQ70_06895) - 514819..515400 (-) 582 WP_003690895.1 superoxide dismutase -
  NDQ70_RS02655 (NDQ70_06890) dnaB 515564..516967 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDQ70_RS12040 - 516961..517073 (-) 113 Protein_516 IS5/IS1182 family transposase -
  NDQ70_RS02660 (NDQ70_06885) pilH 517224..517886 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDQ70_RS02665 (NDQ70_06880) pilI 517918..518532 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  NDQ70_RS02670 (NDQ70_06875) pilJ 518529..519488 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDQ70_RS02675 (NDQ70_06870) pilK 519467..520066 (+) 600 WP_260247273.1 pilus assembly protein Machinery gene
  NDQ70_RS02680 (NDQ70_06865) pilL 520081..520554 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDQ70_RS02685 (NDQ70_06860) - 520624..520932 (-) 309 WP_003706588.1 AzlD family protein -
  NDQ70_RS02690 (NDQ70_06855) - 520929..521640 (-) 712 Protein_523 AzlC family ABC transporter permease -
  NDQ70_RS02695 (NDQ70_06850) dut 521806..522258 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDQ70_RS02700 (NDQ70_06845) dapC 522330..523517 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22099.99 Da        Isoelectric Point: 4.9673

>NTDB_id=696680 NDQ70_RS02665 WP_012503479.1 517918..518532(+) (pilI) [Neisseria gonorrhoeae strain 10525]
MKNNDCLRLKNPQSGMALIEVLVAMLVLTIGILALLSVQLRTVASVREAETQTIVSQITQNLMEGMLMNPTIDSDSNKKN
YNLYTGPYTPTPSGGDFKLNNNNLISKKDLAKAQLDRFDYELRNALPDAVAIHYAVCKDSSGGAPTLSGGTFSPNCDNKA
NGDTLIKVLWVNDSAGDSDISRTNLEVSGDNIVYTYQARVGGHE

Nucleotide


Download         Length: 615 bp        

>NTDB_id=696680 NDQ70_RS02665 WP_012503479.1 517918..518532(+) (pilI) [Neisseria gonorrhoeae strain 10525]
ATGAAGAATAATGATTGCTTGCGCCTGAAAAATCCCCAGTCCGGTATGGCGTTGATAGAAGTCTTGGTCGCTATGCTCGT
TCTGACCATCGGTATTTTGGCATTGCTGTCCGTACAGTTGCGGACGGTCGCTTCCGTCAGGGAGGCGGAGACACAAACCA
TCGTCAGCCAAATCACGCAAAACCTGATGGAAGGAATGTTGATGAATCCGACCATTGATTCGGACAGCAACAAGAAAAAC
TATAATCTTTACACGGGGCCGTACACCCCCACTCCCTCTGGCGGCGATTTCAAGCTTAATAATAATAATTTGATAAGTAA
GAAGGATTTGGCAAAAGCCCAGTTGGACAGGTTCGATTATGAATTGAGAAACGCCTTGCCGGATGCGGTAGCTATTCATT
ACGCCGTCTGCAAGGATTCGTCGGGTGGCGCGCCGACATTGTCCGGCGGTACTTTTTCTCCAAATTGCGATAATAAGGCA
AACGGGGATACTTTGATTAAAGTATTGTGGGTAAATGATTCGGCAGGGGATTCGGATATTTCCCGTACGAATCTTGAGGT
GAGCGGCGACAATATCGTATATACCTATCAGGCAAGGGTCGGAGGTCATGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilI Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria gonorrhoeae MS11

90.686

100

0.907
  pilV Neisseria meningitidis 8013

84.135

100

0.858