NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	NDN18_RS17745	Genome accession	NZ_CP098521
Coordinates	3699320..3700180 (+)	Length	286 a.a.
NCBI ID	WP_001152283.1	Uniprot ID	A0A009QK25
Organism	Acinetobacter baumannii strain Cl107
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3694320..3705180

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDN18_RS17725 (NDN18_17720)	secG	3694926..3695255 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
NDN18_RS17730 (NDN18_17725)	tpiA	3695268..3696062 (-)	795	WP_000016932.1	triose-phosphate isomerase	-
NDN18_RS17735 (NDN18_17730)	pilB	3696353..3698065 (+)	1713	WP_001274992.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NDN18_RS17740 (NDN18_17735)	pilC	3698094..3699320 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
NDN18_RS17745	pilD	3699320..3700180 (+)	861	WP_001152283.1	A24 family peptidase	Machinery gene
NDN18_RS17750 (NDN18_17750)	coaE	3700182..3700778 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
NDN18_RS17755 (NDN18_17755)	-	3700775..3701689 (-)	915	WP_000075020.1	DMT family transporter	-
NDN18_RS17760 (NDN18_17760)	rlmB	3701725..3702474 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
NDN18_RS17765 (NDN18_17765)	-	3702576..3702902 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
NDN18_RS17770 (NDN18_17770)	-	3702979..3704289 (-)	1311	WP_000753283.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32144.59 Da Isoelectric Point: 7.1041

                                >NTDB_id=696587 NDN18_RS17745 WP_001152283.1 3699320..3700180(+) (pilD) [Acinetobacter baumannii strain Cl107]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPRMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPVIELLTMLCSLVVVMMFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=696587 NDN18_RS17745 WP_001152283.1 3699320..3700180(+) (pilD) [Acinetobacter baumannii strain Cl107]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTAATTTACCGCACGCCAAGAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGTTACTCA

ATCCTGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCAATCAG

TATTCGCTATCCAGTCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGATGTTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A009QK25

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Acinetobacter baumannii D1279779	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	53.676	95.105	0.51
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0696587