Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NDN18_RS02035 Genome accession   NZ_CP098521
Coordinates   424069..424704 (-) Length   211 a.a.
NCBI ID   WP_000472261.1    Uniprot ID   A0AAQ0VFS4
Organism   Acinetobacter baumannii strain Cl107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 419069..429704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS02000 (NDN18_02000) mlaE 419405..420181 (+) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NDN18_RS02005 (NDN18_02005) - 420181..420861 (+) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NDN18_RS02010 (NDN18_02010) - 420888..421529 (+) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  NDN18_RS02015 (NDN18_02015) - 421541..421828 (+) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  NDN18_RS02020 (NDN18_02020) - 421898..422911 (-) 1014 WP_000888321.1 CorA family divalent cation transporter -
  NDN18_RS02025 (NDN18_02025) - 423069..423650 (+) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  NDN18_RS02030 (NDN18_02030) - 423665..424066 (+) 402 WP_000849701.1 NUDIX domain-containing protein -
  NDN18_RS02035 (NDN18_02035) comF 424069..424704 (-) 636 WP_000472261.1 ComF family protein Machinery gene
  NDN18_RS02040 (NDN18_02040) recG 424697..426742 (-) 2046 WP_000204958.1 ATP-dependent DNA helicase RecG -
  NDN18_RS02045 (NDN18_02045) - 426763..427578 (+) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  NDN18_RS02050 (NDN18_02050) adeT2 427658..428644 (+) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24574.70 Da        Isoelectric Point: 9.7140

>NTDB_id=696562 NDN18_RS02035 WP_000472261.1 424069..424704(-) (comF) [Acinetobacter baumannii strain Cl107]
MFKFLNPHYLFQLLSPCLLCEIGTREKYSLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLSKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=696562 NDN18_RS02035 WP_000472261.1 424069..424704(-) (comF) [Acinetobacter baumannii strain Cl107]
ATGTTTAAGTTTTTAAACCCACATTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAACACGGGAAAA
ATATTCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGATCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATCATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGAGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTACTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGCCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(114-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

99.526

100

0.995
  comF Acinetobacter baumannii D1279779

98.578

100

0.986