Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   NDN18_RS01545 Genome accession   NZ_CP098521
Coordinates   321874..322401 (+) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain Cl107     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 316874..327401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN18_RS01530 (NDN18_01530) pilM 319427..320485 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  NDN18_RS01535 (NDN18_01535) pilN 320485..321126 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  NDN18_RS01540 (NDN18_01540) pilO 321123..321863 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN18_RS01545 (NDN18_01545) pilP 321874..322401 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  NDN18_RS01550 (NDN18_01550) pilQ 322464..324629 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN18_RS01555 (NDN18_01555) aroK 324641..325210 (+) 570 WP_000643712.1 shikimate kinase AroK -
  NDN18_RS01560 (NDN18_01560) aroB 325239..326321 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  NDN18_RS01565 (NDN18_01565) - 326337..327212 (+) 876 WP_000218808.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=696552 NDN18_RS01545 WP_000695061.1 321874..322401(+) (pilP) [Acinetobacter baumannii strain Cl107]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=696552 NDN18_RS01545 WP_000695061.1 321874..322401(+) (pilP) [Acinetobacter baumannii strain Cl107]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714