Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDL72_RS02685 Genome accession   NZ_CP098505
Coordinates   519318..519917 (+) Length   199 a.a.
NCBI ID   WP_260247273.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10536     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514318..524917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL72_RS02660 (NDL72_02640) - 514670..515251 (-) 582 WP_003690895.1 superoxide dismutase -
  NDL72_RS02665 (NDL72_02645) dnaB 515415..516818 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDL72_RS12060 - 516812..516924 (-) 113 Protein_519 IS5/IS1182 family transposase -
  NDL72_RS02670 (NDL72_02650) pilH 517075..517737 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL72_RS02675 (NDL72_02655) pilI 517769..518383 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  NDL72_RS02680 (NDL72_02660) pilJ 518380..519339 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDL72_RS02685 (NDL72_02665) pilK 519318..519917 (+) 600 WP_260247273.1 pilus assembly protein Machinery gene
  NDL72_RS02690 (NDL72_02670) pilL 519932..520405 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDL72_RS02695 (NDL72_02675) - 520475..520783 (-) 309 WP_003706588.1 AzlD family protein -
  NDL72_RS02700 (NDL72_02680) - 520780..521491 (-) 712 Protein_526 AzlC family ABC transporter permease -
  NDL72_RS02705 (NDL72_02685) dut 521657..522109 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDL72_RS02710 (NDL72_02690) dapC 522181..523368 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  NDL72_RS02715 (NDL72_02695) yaaA 523524..524303 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21535.47 Da        Isoelectric Point: 8.7715

>NTDB_id=696418 NDL72_RS02685 WP_260247273.1 519318..519917(+) (pilK) [Neisseria gonorrhoeae strain 10536]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNDNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTGNVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGN

Nucleotide


Download         Length: 600 bp        

>NTDB_id=696418 NDL72_RS02685 WP_260247273.1 519318..519917(+) (pilK) [Neisseria gonorrhoeae strain 10536]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATGATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGTACGGGAAACGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.98

100

0.96