Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilJ   Type   Machinery gene
Locus tag   NDL72_RS02680 Genome accession   NZ_CP098505
Coordinates   518380..519339 (+) Length   319 a.a.
NCBI ID   WP_260247272.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10536     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 515415..559116 518380..519339 within 0


Gene organization within MGE regions


Location: 515415..559116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL72_RS02665 (NDL72_02645) dnaB 515415..516818 (+) 1404 WP_012503477.1 replicative DNA helicase -
  NDL72_RS12060 - 516812..516924 (-) 113 Protein_519 IS5/IS1182 family transposase -
  NDL72_RS02670 (NDL72_02650) pilH 517075..517737 (+) 663 WP_041421240.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL72_RS02675 (NDL72_02655) pilI 517769..518383 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Machinery gene
  NDL72_RS02680 (NDL72_02660) pilJ 518380..519339 (+) 960 WP_260247272.1 PilW family protein Machinery gene
  NDL72_RS02685 (NDL72_02665) pilK 519318..519917 (+) 600 WP_260247273.1 pilus assembly protein Machinery gene
  NDL72_RS02690 (NDL72_02670) pilL 519932..520405 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  NDL72_RS02695 (NDL72_02675) - 520475..520783 (-) 309 WP_003706588.1 AzlD family protein -
  NDL72_RS02700 (NDL72_02680) - 520780..521491 (-) 712 Protein_526 AzlC family ABC transporter permease -
  NDL72_RS02705 (NDL72_02685) dut 521657..522109 (+) 453 WP_003701071.1 dUTP diphosphatase -
  NDL72_RS02710 (NDL72_02690) dapC 522181..523368 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  NDL72_RS02715 (NDL72_02695) yaaA 523524..524303 (+) 780 WP_003687925.1 peroxide stress protein YaaA -
  NDL72_RS02730 (NDL72_02710) - 524833..526034 (+) 1202 Protein_530 tyrosine-type recombinase/integrase -
  NDL72_RS02735 (NDL72_02715) - 526390..526659 (-) 270 WP_003687928.1 hypothetical protein -
  NDL72_RS02740 (NDL72_02720) - 526854..527537 (-) 684 WP_003687929.1 DUF2786 domain-containing protein -
  NDL72_RS11890 - 527818..528084 (-) 267 Protein_533 hypothetical protein -
  NDL72_RS02750 (NDL72_02730) - 528195..528410 (-) 216 WP_003691538.1 hypothetical protein -
  NDL72_RS02755 (NDL72_02735) - 528462..528953 (-) 492 WP_003691537.1 siphovirus Gp157 family protein -
  NDL72_RS02760 (NDL72_02740) - 528950..529132 (-) 183 WP_003691535.1 hypothetical protein -
  NDL72_RS02765 (NDL72_02745) - 529272..529958 (-) 687 WP_012503754.1 phage replication initiation protein, NGO0469 family -
  NDL72_RS02770 (NDL72_02750) - 530027..530188 (-) 162 WP_003702497.1 hypothetical protein -
  NDL72_RS02775 (NDL72_02755) - 530185..530463 (-) 279 WP_003691529.1 NGO1622 family putative holin -
  NDL72_RS02780 (NDL72_02760) - 530616..530948 (-) 333 WP_003687946.1 hypothetical protein -
  NDL72_RS02785 (NDL72_11840) - 531089..531376 (-) 288 WP_071236956.1 hypothetical protein -
  NDL72_RS02790 (NDL72_02765) - 531373..531849 (-) 477 WP_012504141.1 DUF6948 domain-containing protein -
  NDL72_RS02795 (NDL72_02770) - 531882..532082 (-) 201 WP_003704298.1 hypothetical protein -
  NDL72_RS02800 (NDL72_02775) - 532281..532694 (-) 414 WP_003687963.1 hypothetical protein -
  NDL72_RS02805 (NDL72_02780) - 532691..533152 (-) 462 WP_003687965.1 helix-turn-helix domain-containing protein -
  NDL72_RS02810 (NDL72_02785) - 533169..533606 (-) 438 WP_003687967.1 hypothetical protein -
  NDL72_RS02815 (NDL72_02790) - 533721..534437 (-) 717 WP_003687969.1 LexA family transcriptional regulator -
  NDL72_RS02820 (NDL72_02795) - 534512..534742 (+) 231 WP_020997318.1 Cro/CI family transcriptional regulator -
  NDL72_RS02825 (NDL72_02800) - 534822..534977 (+) 156 WP_003691446.1 hypothetical protein -
  NDL72_RS02830 (NDL72_02805) - 534954..535142 (-) 189 WP_003698903.1 hypothetical protein -
  NDL72_RS02835 (NDL72_02810) - 535315..535542 (+) 228 WP_003698261.1 helix-turn-helix domain-containing protein -
  NDL72_RS02840 (NDL72_02815) - 535539..535676 (+) 138 WP_010359998.1 hypothetical protein -
  NDL72_RS02845 (NDL72_11845) - 536221..536724 (+) 504 WP_010360005.1 hypothetical protein -
  NDL72_RS02850 (NDL72_02825) - 536721..538082 (+) 1362 WP_003689132.1 DnaB-like helicase C-terminal domain-containing protein -
  NDL72_RS02855 (NDL72_02830) - 538099..538329 (+) 231 WP_012503490.1 hypothetical protein -
  NDL72_RS02860 (NDL72_02835) - 538421..538915 (+) 495 WP_041421248.1 DUF3310 domain-containing protein -
  NDL72_RS02865 (NDL72_02840) - 539112..539261 (+) 150 WP_012503493.1 hypothetical protein -
  NDL72_RS02870 (NDL72_02845) - 539290..539571 (+) 282 WP_003689109.1 hypothetical protein -
  NDL72_RS02875 (NDL72_02850) - 539562..539999 (+) 438 WP_041421250.1 RusA family crossover junction endodeoxyribonuclease -
  NDL72_RS02880 (NDL72_02855) - 539992..540297 (+) 306 WP_003687981.1 nuclease domain-containing protein -
  NDL72_RS02885 (NDL72_02860) - 540294..540677 (+) 384 WP_003687982.1 recombination protein NinB -
  NDL72_RS02890 (NDL72_02865) - 540668..541186 (+) 519 WP_003687984.1 HNH endonuclease -
  NDL72_RS02895 (NDL72_02870) - 541251..541673 (+) 423 WP_003690919.1 hypothetical protein -
  NDL72_RS02900 (NDL72_02875) - 541673..542212 (+) 540 WP_003690920.1 hypothetical protein -
  NDL72_RS02905 (NDL72_02880) - 542193..543467 (+) 1275 WP_003701186.1 PBSX family phage terminase large subunit -
  NDL72_RS02910 (NDL72_02885) - 543452..545719 (+) 2268 WP_228369784.1 hypothetical protein -
  NDL72_RS02915 (NDL72_02890) - 545956..547152 (+) 1197 WP_003687992.1 hypothetical protein -
  NDL72_RS02920 (NDL72_02895) - 547149..548363 (+) 1215 WP_044270986.1 hypothetical protein -
  NDL72_RS12065 - 548566..554475 (+) 5910 WP_033909227.1 PLxRFG domain-containing protein -
  NDL72_RS02935 (NDL72_02910) - 555101..556387 (+) 1287 WP_071200297.1 DUF4043 family protein -
  NDL72_RS02940 (NDL72_02915) - 556442..556915 (+) 474 WP_003690936.1 hypothetical protein -
  NDL72_RS02945 (NDL72_02920) - 556921..557406 (+) 486 WP_003687997.1 hypothetical protein -
  NDL72_RS02950 (NDL72_02925) - 557403..557678 (+) 276 WP_010358526.1 hypothetical protein -
  NDL72_RS02955 (NDL72_02930) - 557669..558076 (+) 408 WP_010358525.1 hypothetical protein -
  NDL72_RS02960 (NDL72_02935) - 558067..558228 (+) 162 WP_003687999.1 hypothetical protein -
  NDL72_RS02965 (NDL72_02940) - 558265..559116 (-) 852 WP_260247274.1 Bro-N domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 35235.20 Da        Isoelectric Point: 9.5285

>NTDB_id=696417 NDL72_RS02680 WP_260247272.1 518380..519339(+) (pilJ) [Neisseria gonorrhoeae strain 10536]
MKRKMLNVPKGGYDGMKGFTIVEFLVAGLLSVIVLIAVVSSYFTSRKLNDAANERLAIQQDLRNAATLIVRDARMAGSFG
CFNMSEHTEKDVFSDVAQKNRLFSLKMNSTNKVISNGTDNKLIPIAESLNIRYQGFTHRPNALIFQYGIDDVNASADTTV
VSSCAAISKPGKQILNLEDVKKELKIVGQGKEQNGNIARQRHVVNAYAVGRFGNEEGLFRFQLNEKGEWGNPQLLAKKIK
RMRVRYIYVSGCPEDEDAGKEEQFKYTDKFDSSVTPAGVEVLLDSGSDAKIAASSDNIIYAYRINATIRGGNVCANRTL

Nucleotide


Download         Length: 960 bp        

>NTDB_id=696417 NDL72_RS02680 WP_260247272.1 518380..519339(+) (pilJ) [Neisseria gonorrhoeae strain 10536]
ATGAAACGTAAAATGCTAAACGTACCAAAGGGCGGTTATGATGGTATGAAGGGTTTTACCATTGTTGAATTTCTGGTTGC
GGGCCTGCTCAGTGTGATTGTCCTGATAGCGGTCGTATCGAGTTACTTTACATCCCGGAAATTAAATGATGCGGCAAACG
AGCGTCTTGCCATTCAACAGGATTTGCGGAATGCGGCAACATTGATTGTCCGCGATGCAAGAATGGCGGGGAGCTTCGGT
TGTTTCAATATGTCTGAGCATACCGAAAAGGATGTTTTTTCCGATGTGGCGCAAAAAAACCGTCTTTTTTCCTTAAAAAT
GAACAGTACAAATAAAGTTATCTCCAACGGTACAGATAATAAACTTATCCCCATAGCGGAATCTTTAAATATCAGATATC
AGGGTTTTACCCATCGCCCTAACGCATTGATTTTTCAATACGGAATCGATGATGTTAATGCAAGCGCCGATACTACCGTC
GTCAGCAGCTGTGCCGCAATATCGAAACCGGGCAAGCAAATCCTTAATTTAGAAGATGTAAAAAAAGAATTGAAGATTGT
GGGTCAGGGTAAGGAGCAAAATGGCAATATAGCGCGTCAAAGGCATGTGGTCAATGCCTATGCGGTCGGCAGGTTTGGCA
ATGAGGAAGGTTTGTTCCGCTTCCAATTGAATGAAAAGGGCGAGTGGGGTAATCCTCAGTTGCTCGCGAAAAAGATTAAA
CGTATGAGAGTGCGGTATATCTATGTTTCCGGTTGTCCTGAAGATGAAGATGCCGGCAAAGAGGAACAATTCAAATATAC
GGATAAATTCGACAGCTCTGTTACGCCTGCCGGGGTGGAGGTTTTATTGGATAGCGGTAGTGATGCCAAGATTGCCGCTT
CTTCAGATAATATTATTTATGCTTACCGTATCAATGCGACAATACGCGGGGGAAATGTATGCGCAAACAGAACACTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilJ Neisseria gonorrhoeae MS11

86.52

100

0.865