Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NDL73_RS11585 Genome accession   NZ_CP098503
Coordinates   2202047..2202658 (+) Length   203 a.a.
NCBI ID   WP_033911077.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10268     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 2196767..2210260 2202047..2202658 within 0


Gene organization within MGE regions


Location: 2196767..2210260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL73_RS11555 (NDL73_02305) - 2196767..2197276 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  NDL73_RS11560 (NDL73_02310) - 2197508..2198089 (-) 582 WP_003690895.1 superoxide dismutase -
  NDL73_RS11565 (NDL73_02315) dnaB 2198253..2199659 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NDL73_RS11570 (NDL73_02320) pilH 2199813..2200478 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NDL73_RS11575 (NDL73_02325) pilV 2200510..2201121 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NDL73_RS11580 (NDL73_02330) pilJ 2201118..2202068 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NDL73_RS11585 (NDL73_02335) pilK 2202047..2202658 (+) 612 WP_033911077.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  NDL73_RS11590 (NDL73_02340) pilL 2202660..2203133 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NDL73_RS11595 (NDL73_02345) - 2203203..2203511 (-) 309 WP_025456177.1 AzlD family protein -
  NDL73_RS11600 (NDL73_02350) - 2203508..2204218 (-) 711 Protein_2243 AzlC family ABC transporter permease -
  NDL73_RS11605 (NDL73_02355) dut 2204384..2204836 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NDL73_RS11610 (NDL73_02360) dapC 2204912..2206099 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NDL73_RS11615 (NDL73_02365) yaaA 2206255..2207034 (+) 780 WP_003699641.1 peroxide stress protein YaaA -
  NDL73_RS11630 (NDL73_02380) - 2207564..2208757 (+) 1194 WP_017146746.1 phage integrase central domain-containing protein -
  NDL73_RS11635 (NDL73_02385) - 2209113..2209382 (-) 270 WP_003687928.1 hypothetical protein -
  NDL73_RS11640 (NDL73_02390) - 2209577..2210260 (-) 684 WP_003687929.1 DUF2786 domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22068.97 Da        Isoelectric Point: 7.5813

>NTDB_id=696402 NDL73_RS11585 WP_033911077.1 2202047..2202658(+) (pilK) [Neisseria gonorrhoeae strain 10268]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=696402 NDL73_RS11585 WP_033911077.1 2202047..2202658(+) (pilK) [Neisseria gonorrhoeae strain 10268]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.567

100

0.956