Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDL73_RS08520 Genome accession   NZ_CP098503
Coordinates   1615358..1615690 (-) Length   110 a.a.
NCBI ID   WP_396890601.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10268     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1610358..1620690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDL73_RS08495 (NDL73_10875) thiC 1610875..1612776 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  NDL73_RS08500 (NDL73_10880) - 1613287..1613645 (-) 359 Protein_1632 pilin -
  NDL73_RS08505 (NDL73_10885) - 1613685..1614038 (-) 354 Protein_1633 pilin -
  NDL73_RS08510 (NDL73_10890) - 1614065..1614424 (-) 360 Protein_1634 pilin -
  NDL73_RS08515 (NDL73_10895) - 1614464..1614868 (-) 405 Protein_1635 pilin -
  NDL73_RS08520 (NDL73_10900) pilE 1615358..1615690 (-) 333 WP_396890601.1 pilin Machinery gene
  NDL73_RS08525 (NDL73_10905) - 1615771..1616145 (-) 375 Protein_1637 pilin -
  NDL73_RS08530 (NDL73_10910) - 1616623..1616982 (-) 360 Protein_1638 pilin -
  NDL73_RS08535 (NDL73_10915) - 1617023..1617340 (-) 318 Protein_1639 pilin -
  NDL73_RS08540 (NDL73_10920) - 1617344..1617652 (+) 309 Protein_1640 NAD(P)-dependent oxidoreductase -
  NDL73_RS08545 (NDL73_10925) metG 1617727..1619781 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11947.66 Da        Isoelectric Point: 10.3715

>NTDB_id=696383 NDL73_RS08520 WP_396890601.1 1615358..1615690(-) (pilE) [Neisseria gonorrhoeae strain 10268]
MAGKQHFCRRGIPPDKIKGKYVKEVEVKNGVVTAKMKSDGVNKEIQGKRLSLWAKRENGSVKWFCGQPVTRADDAVKAGT
DAVTADTTGKDKIETKHLPSTCRDTSSAGT

Nucleotide


Download         Length: 333 bp        

>NTDB_id=696383 NDL73_RS08520 WP_396890601.1 1615358..1615690(-) (pilE) [Neisseria gonorrhoeae strain 10268]
ATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCCCGACAAAATCAAAGGCAAATATGTTAAAGAGGTTGAAGT
TAAAAACGGCGTCGTCACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAATCCAAGGCAAAAGACTCTCCCTGTGGG
CCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGACGACGCCGTCAAAGCCGGCACC
GACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCATC
TGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(15-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.579

86.364

0.618
  pilE Neisseria gonorrhoeae strain FA1090

56.522

100

0.591