Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   HXS59_RS05890 Genome accession   NZ_AP023224
Coordinates   1206577..1207314 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain YJ1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1201577..1212314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS59_RS05860 yfiL 1201735..1202100 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  HXS59_RS05865 aroF 1202310..1203380 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  HXS59_RS05870 tyrA 1203391..1204512 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  HXS59_RS05875 pheA 1204555..1205715 (-) 1161 WP_000200101.1 bifunctional chorismate mutase/prephenate dehydratase -
  HXS59_RS05880 pheL 1205814..1205861 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  HXS59_RS05885 raiA 1205965..1206306 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  HXS59_RS05890 comL 1206577..1207314 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  HXS59_RS05895 rluD 1207449..1208429 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HXS59_RS05900 yfiH 1208426..1209157 (+) 732 WP_000040129.1 purine nucleoside phosphorylase YfiH -
  HXS59_RS05905 clpC 1209287..1211860 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=69635 HXS59_RS05890 WP_000197686.1 1206577..1207314(-) (comL) [Escherichia coli strain YJ1]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=69635 HXS59_RS05890 WP_000197686.1 1206577..1207314(-) (comL) [Escherichia coli strain YJ1]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment