Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NDK36_RS16245 Genome accession   NZ_CP098491
Coordinates   3022815..3023459 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain NB205     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3017815..3028459
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS16210 (NDK36_16210) mrpB 3019007..3019438 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  NDK36_RS16215 (NDK36_16215) mrpC 3019438..3019779 (+) 342 WP_014480700.1 Na(+)/H(+) antiporter subunit C -
  NDK36_RS16220 (NDK36_16220) mrpD 3019772..3021253 (+) 1482 WP_033881486.1 Na+/H+ antiporter subunit D -
  NDK36_RS16225 (NDK36_16225) mrpE 3021259..3021735 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  NDK36_RS16230 (NDK36_16230) mrpF 3021735..3022019 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  NDK36_RS16235 (NDK36_16235) mnhG 3022003..3022377 (+) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  NDK36_RS16240 (NDK36_16240) yuxO 3022416..3022796 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  NDK36_RS16245 (NDK36_16245) comA 3022815..3023459 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  NDK36_RS16250 (NDK36_16250) comP 3023540..3025852 (-) 2313 WP_014480703.1 sensor histidine kinase Regulator
  NDK36_RS16255 (NDK36_16255) comX 3025868..3026089 (-) 222 WP_014480704.1 competence pheromone ComX -
  NDK36_RS16260 (NDK36_16260) - 3026091..3026954 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  NDK36_RS16265 (NDK36_16265) degQ 3027139..3027279 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  NDK36_RS16270 (NDK36_16270) - 3027501..3027626 (+) 126 WP_003228793.1 hypothetical protein -
  NDK36_RS16275 (NDK36_16275) - 3027740..3028108 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=696313 NDK36_RS16245 WP_003220716.1 3022815..3023459(-) (comA) [Bacillus subtilis strain NB205]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=696313 NDK36_RS16245 WP_003220716.1 3022815..3023459(-) (comA) [Bacillus subtilis strain NB205]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATAGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1