Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   NDK36_RS12775 Genome accession   NZ_CP098491
Coordinates   2371304..2372374 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain NB205     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2366304..2377374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS12730 (NDK36_12730) tapA 2366783..2367544 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NDK36_RS12735 (NDK36_12735) yqzG 2367816..2368142 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NDK36_RS12740 (NDK36_12740) spoIITA 2368184..2368363 (-) 180 WP_014480252.1 YqzE family protein -
  NDK36_RS12745 (NDK36_12745) comGG 2368434..2368808 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NDK36_RS12750 (NDK36_12750) comGF 2368809..2369192 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  NDK36_RS12755 (NDK36_12755) comGE 2369218..2369565 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NDK36_RS12760 (NDK36_12760) comGD 2369549..2369980 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NDK36_RS12765 (NDK36_12765) comGC 2369970..2370266 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  NDK36_RS12770 (NDK36_12770) comGB 2370280..2371317 (-) 1038 WP_031600685.1 comG operon protein ComGB Machinery gene
  NDK36_RS12775 (NDK36_12775) comGA 2371304..2372374 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  NDK36_RS12780 (NDK36_12780) - 2372586..2372783 (-) 198 WP_014480259.1 CBS domain-containing protein -
  NDK36_RS12785 (NDK36_12785) corA 2372785..2373738 (-) 954 WP_014480260.1 magnesium transporter CorA -
  NDK36_RS12790 (NDK36_12790) yqhB 2373880..2375208 (+) 1329 WP_014480261.1 hemolysin family protein -
  NDK36_RS12795 (NDK36_12795) rsbRD 2375261..2376097 (-) 837 WP_014480262.1 RsbT co-antagonist protein RsbRD -
  NDK36_RS12805 (NDK36_12805) mgsR 2376321..2376701 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  NDK36_RS12810 (NDK36_12810) yqgY 2376933..2377178 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=696299 NDK36_RS12775 WP_004399124.1 2371304..2372374(-) (comGA) [Bacillus subtilis strain NB205]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=696299 NDK36_RS12775 WP_004399124.1 2371304..2372374(-) (comGA) [Bacillus subtilis strain NB205]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAAGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1