Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PCP19_RS25760 Genome accession   NZ_CP115215
Coordinates   5511112..5511756 (-) Length   214 a.a.
NCBI ID   WP_329006224.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F062     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 5506112..5516756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP19_RS25750 (PCP19_25715) pgsA 5508691..5509251 (-) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PCP19_RS25755 (PCP19_25720) uvrC 5509285..5511111 (-) 1827 WP_003097551.1 excinuclease ABC subunit UvrC -
  PCP19_RS25760 (PCP19_25725) letA 5511112..5511756 (-) 645 WP_329006224.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PCP19_RS25765 (PCP19_25730) pqsH 5512098..5513246 (-) 1149 WP_003090354.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PCP19_RS25770 (PCP19_25735) - 5513864..5514892 (+) 1029 WP_003097554.1 AraC family transcriptional regulator -
  PCP19_RS25775 (PCP19_25740) - 5514908..5516122 (-) 1215 WP_023086158.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23636.58 Da        Isoelectric Point: 6.1073

>NTDB_id=696276 PCP19_RS25760 WP_329006224.1 5511112..5511756(-) (letA) [Pseudomonas aeruginosa strain F062]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGVAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=696276 PCP19_RS25760 WP_329006224.1 5511112..5511756(-) (letA) [Pseudomonas aeruginosa strain F062]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAACTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCAACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGTCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAGCTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.028

98.598

0.533
  letA Legionella pneumophila strain ERS1305867

54.028

98.598

0.533