Detailed information NTG0069627

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: UNDYM_RS04165
• Genome accession: NZ_AP018441
• Coordinates: 905816..907270 (+)
• Length: 484 a.a.
• NCBI ID: WP_304941425.1
• Uniprot ID: A0A809PG41
• Organism: Undibacterium sp. YM2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 900816..912270

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UNDYM_RS04145 (UNDYM_0836)	-	901556..902905 (+)	1350	WP_162044438.1	sigma-54 dependent transcriptional regulator	-
UNDYM_RS04150 (UNDYM_0837)	-	902975..903784 (+)	810	WP_162039905.1	inner membrane protein YpjD	-
UNDYM_RS04155 (UNDYM_0838)	-	903781..904032 (+)	252	WP_162039906.1	PP0621 family protein	-
UNDYM_RS04160 (UNDYM_0839)	-	904056..905819 (+)	1764	WP_162039907.1	PAS domain-containing sensor histidine kinase	-
UNDYM_RS04165 (UNDYM_0840)	pilR	905816..907270 (+)	1455	WP_304941425.1	sigma-54 dependent transcriptional regulator	Regulator
UNDYM_RS04170 (UNDYM_0841)	-	908049..910964 (+)	2916	WP_162039908.1	ribonucleoside-diphosphate reductase subunit alpha	-
UNDYM_RS04175 (UNDYM_0842)	-	911044..912213 (+)	1170	WP_162039909.1	ribonucleotide-diphosphate reductase subunit beta	-

Sequence

Protein

• Length: 484 a.a.
• Molecular weight: 53280.33 Da
• Isoelectric Point: 5.0898

>NTDB_id=69627 UNDYM_RS04165 WP_304941425.1 905816..907270(+) (pilR) [Undibacterium sp. YM2]
MSMIEAAACPRILVVDDEAHLRELLEITLIKMGLDVDSAETLALARAHLSKRSYALVLTDMRLPDGSGMELVQEVSALYK
NTPIAVITAFGSADNAVVALKAGAFDYVSKPVALDQLRKLVRSALQTNEVQKVQLATPEKLNVPASSFMIGQSQGMQEVR
AQISRLARSMAPVIITGESGSGKELAAREIHTSSARADKPFIAVNCGAIPETLMEAEFFGYRKGAFTGAADDREGFFQAA
NGGTLMLDEVADLPLPMQVKLLRAIQERRVRKVGATVEEAVDVRIISATHQNLAICVEEGRFRQDLYYRLNVIELHLPPL
RERLEDIVELSRNILKKLTGNDVDMSVEATDALISYDFPGNVRELENILERAVAFANDGCIEVSDLALRGTRKLPELPIA
QPVPTAIINNHSDIVPELPAVTTLDVFSAPSLPCSLPDYLESVEREMIRRALQQTRNNRTQAAELLGVSFRQLRYQIQKL
KIQE

Nucleotide

• Length: 1455 bp

>NTDB_id=69627 UNDYM_RS04165 WP_304941425.1 905816..907270(+) (pilR) [Undibacterium sp. YM2]
ATGAGTATGATAGAAGCTGCGGCCTGTCCCCGCATCCTGGTAGTGGATGATGAGGCGCACCTGCGCGAACTGCTGGAGAT
TACCCTGATCAAAATGGGGCTGGATGTCGATAGCGCAGAAACCCTGGCACTGGCCCGCGCCCATTTGAGCAAGCGTAGCT
ATGCACTGGTATTGACCGATATGCGTCTGCCGGATGGCTCGGGTATGGAGCTGGTGCAGGAAGTGAGTGCACTATATAAA
AATACGCCCATTGCCGTGATCACTGCTTTTGGTAGTGCCGACAATGCCGTGGTTGCCTTGAAGGCCGGTGCTTTCGACTA
TGTATCCAAGCCAGTGGCGCTTGACCAGTTGCGCAAGCTCGTCAGGTCGGCCCTGCAAACCAATGAGGTTCAAAAAGTAC
AACTGGCGACTCCGGAAAAACTGAACGTCCCCGCCAGTTCTTTCATGATAGGCCAGTCGCAAGGCATGCAAGAGGTCAGG
GCGCAGATCAGCCGTCTGGCACGCAGCATGGCACCGGTTATTATTACTGGCGAATCTGGTAGCGGCAAGGAGTTGGCGGC
GCGCGAAATACACACCAGCAGTGCCAGGGCTGATAAACCTTTTATCGCTGTCAATTGCGGGGCAATTCCCGAGACCTTGA
TGGAAGCGGAATTCTTTGGTTACAGAAAAGGCGCATTTACCGGCGCTGCTGATGACAGGGAAGGCTTTTTCCAGGCTGCC
AACGGCGGCACCTTGATGCTTGATGAAGTAGCCGACCTGCCTTTGCCCATGCAAGTCAAGTTACTGCGTGCCATACAGGA
AAGGCGCGTGCGCAAGGTTGGTGCCACGGTTGAAGAGGCAGTCGATGTGCGCATTATCAGTGCGACCCACCAGAACCTGG
CAATCTGCGTAGAAGAAGGGCGCTTCCGGCAAGACTTGTATTACCGCCTGAATGTCATTGAATTGCACTTGCCACCTCTG
CGCGAAAGACTGGAGGATATAGTCGAGCTGTCGCGCAATATCCTCAAAAAACTGACTGGCAATGATGTTGATATGTCAGT
AGAGGCAACTGATGCCTTGATCAGTTATGACTTTCCCGGCAATGTGCGTGAGCTGGAAAACATATTGGAGCGCGCAGTTG
CCTTTGCCAATGATGGCTGCATAGAGGTCAGCGACCTGGCCTTGCGCGGAACCAGGAAGTTGCCTGAACTGCCTATAGCA
CAGCCGGTCCCGACCGCTATTATCAATAATCATAGCGATATTGTTCCTGAATTACCCGCTGTTACCACGCTGGATGTATT
CTCTGCTCCAAGTTTGCCTTGCTCGCTGCCCGACTATCTCGAAAGCGTAGAGCGCGAAATGATACGCCGTGCCCTGCAGC
AGACCCGTAACAACCGTACCCAGGCGGCAGAATTGCTGGGTGTGAGTTTCCGTCAACTGCGTTACCAGATACAGAAACTG
AAGATCCAGGAGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (12-121)

• Bacterial regulatory protein, Fis family (HTH_8) (440-480)

• Sigma-54 interaction domain (Sigma54_activat) (149-315)

3D structure

• AlphaFold DB: A0A809PG41

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	51.891	98.347	0.51
pilR	Acinetobacter baumannii strain A118	44.792	99.174	0.444