Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NDK36_RS01945 Genome accession   NZ_CP098491
Coordinates   362880..363278 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain NB205     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 357880..368278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS01910 (NDK36_01910) - 358630..358827 (+) 198 WP_121509395.1 hypothetical protein -
  NDK36_RS01915 (NDK36_01915) yckC 358847..359302 (+) 456 WP_014478793.1 RDD family protein -
  NDK36_RS01920 (NDK36_01920) yckD 359384..359716 (+) 333 WP_014478794.1 YckD family protein -
  NDK36_RS01925 (NDK36_01925) - 359844..360266 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  NDK36_RS01930 (NDK36_01930) - 360254..360574 (+) 321 WP_014478796.1 DUF3147 family protein -
  NDK36_RS01935 (NDK36_01935) - 360593..361337 (+) 745 Protein_340 AAA family ATPase -
  NDK36_RS01940 (NDK36_01940) bglC 361410..362843 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  NDK36_RS01945 (NDK36_01945) nin/comJ 362880..363278 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  NDK36_RS01950 (NDK36_01950) nucA/comI 363305..363754 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NDK36_RS01955 (NDK36_01955) tlpC 363922..365643 (-) 1722 Protein_344 methyl-accepting chemotaxis protein TlpC -
  NDK36_RS01960 (NDK36_01960) hxlB 365754..366311 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  NDK36_RS01965 (NDK36_01965) hxlA 366317..366949 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  NDK36_RS01970 (NDK36_01970) hxlR 367178..367540 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=696258 NDK36_RS01945 WP_014478800.1 362880..363278(-) (nin/comJ) [Bacillus subtilis strain NB205]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=696258 NDK36_RS01945 WP_014478800.1 362880..363278(-) (nin/comJ) [Bacillus subtilis strain NB205]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977