Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   NDK36_RS01950 Genome accession   NZ_CP098491
Coordinates   363305..363754 (-) Length   149 a.a.
NCBI ID   WP_014475770.1    Uniprot ID   A0A0D1KPR3
Organism   Bacillus subtilis strain NB205     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 358305..368754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS01910 (NDK36_01910) - 358630..358827 (+) 198 WP_121509395.1 hypothetical protein -
  NDK36_RS01915 (NDK36_01915) yckC 358847..359302 (+) 456 WP_014478793.1 RDD family protein -
  NDK36_RS01920 (NDK36_01920) yckD 359384..359716 (+) 333 WP_014478794.1 YckD family protein -
  NDK36_RS01925 (NDK36_01925) - 359844..360266 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  NDK36_RS01930 (NDK36_01930) - 360254..360574 (+) 321 WP_014478796.1 DUF3147 family protein -
  NDK36_RS01935 (NDK36_01935) - 360593..361337 (+) 745 Protein_340 AAA family ATPase -
  NDK36_RS01940 (NDK36_01940) bglC 361410..362843 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  NDK36_RS01945 (NDK36_01945) nin/comJ 362880..363278 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  NDK36_RS01950 (NDK36_01950) nucA/comI 363305..363754 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  NDK36_RS01955 (NDK36_01955) tlpC 363922..365643 (-) 1722 Protein_344 methyl-accepting chemotaxis protein TlpC -
  NDK36_RS01960 (NDK36_01960) hxlB 365754..366311 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  NDK36_RS01965 (NDK36_01965) hxlA 366317..366949 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  NDK36_RS01970 (NDK36_01970) hxlR 367178..367540 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16440.39 Da        Isoelectric Point: 4.5282

>NTDB_id=696259 NDK36_RS01950 WP_014475770.1 363305..363754(-) (nucA/comI) [Bacillus subtilis strain NB205]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=696259 NDK36_RS01950 WP_014475770.1 363305..363754(-) (nucA/comI) [Bacillus subtilis strain NB205]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KPR3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

98.658

100

0.987