Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NDN13_RS12405 Genome accession   NZ_CP098480
Coordinates   2595020..2595724 (+) Length   234 a.a.
NCBI ID   WP_251115663.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2590020..2600724
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS12385 (NDN13_12380) - 2590312..2590977 (+) 666 WP_251115659.1 LuxR C-terminal-related transcriptional regulator -
  NDN13_RS12390 (NDN13_12385) - 2591041..2592018 (-) 978 WP_251115660.1 putative solute-binding protein -
  NDN13_RS12395 (NDN13_12390) - 2592145..2592963 (-) 819 WP_251115661.1 SDR family NAD(P)-dependent oxidoreductase -
  NDN13_RS12400 (NDN13_12395) recG 2592982..2595027 (+) 2046 WP_251115662.1 ATP-dependent DNA helicase RecG -
  NDN13_RS12405 (NDN13_12400) comF 2595020..2595724 (+) 705 WP_251115663.1 phosphoribosyltransferase family protein Machinery gene
  NDN13_RS12410 (NDN13_12405) - 2595657..2596052 (-) 396 WP_070076023.1 NUDIX domain-containing protein -
  NDN13_RS12415 (NDN13_12410) - 2596063..2596647 (-) 585 WP_251115664.1 TIGR00730 family Rossman fold protein -
  NDN13_RS12420 (NDN13_12415) - 2596819..2597832 (+) 1014 WP_004657647.1 magnesium and cobalt transport protein CorA -
  NDN13_RS12425 (NDN13_12420) - 2597823..2598368 (+) 546 WP_251115665.1 hypothetical protein -
  NDN13_RS12430 (NDN13_12425) - 2598422..2598709 (-) 288 WP_004657643.1 STAS domain-containing protein -
  NDN13_RS12435 (NDN13_12430) - 2598721..2599353 (-) 633 WP_251115666.1 ABC transporter substrate-binding protein -
  NDN13_RS12440 (NDN13_12435) - 2599373..2600047 (-) 675 WP_016542815.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26450.75 Da        Isoelectric Point: 8.8657

>NTDB_id=696152 NDN13_RS12405 WP_251115663.1 2595020..2595724(+) (comF) [Acinetobacter sp. C32I]
MFKRLGTSAQQLFDYLTPCSLCDIGMKRQFGVCHSCWQQLPWLKQSIERNQQQVLVACDYAYPIDRIIQQFKYEQKLHHQ
RILDGLLLQLKLPKVHAIVPMPISADRLAERGFNQALLLAKALSKSLNIPVWQPVQRLAQHSQKGLSRLERLEDIEQQFV
AAPPNSIRYRNVLIVDDVLTTGSSISALSQVLNQLGCQQIYSACVAAAQVKPPNSVDFADTTESQCLSLRVPIK

Nucleotide


Download         Length: 705 bp        

>NTDB_id=696152 NDN13_RS12405 WP_251115663.1 2595020..2595724(+) (comF) [Acinetobacter sp. C32I]
ATGTTTAAACGACTTGGCACATCAGCACAGCAATTATTTGATTATTTAACACCGTGTAGTCTCTGCGACATTGGGATGAA
ACGTCAGTTTGGTGTATGCCACAGTTGCTGGCAACAACTGCCTTGGCTAAAGCAAAGCATTGAGCGTAACCAACAACAGG
TCTTGGTCGCCTGTGATTATGCCTATCCGATTGATCGGATCATTCAACAGTTTAAATATGAGCAAAAACTGCATCATCAA
AGAATATTAGATGGTCTGCTATTACAACTCAAACTTCCGAAAGTACATGCGATTGTACCCATGCCAATTTCGGCCGATCG
TCTAGCAGAACGCGGCTTTAATCAGGCTCTTCTACTCGCCAAGGCATTGAGCAAAAGCTTAAATATCCCCGTTTGGCAAC
CCGTACAACGCTTGGCTCAGCACTCACAAAAAGGACTATCCCGTTTAGAACGTCTTGAAGATATTGAGCAACAGTTTGTG
GCAGCACCACCTAACTCAATCCGTTATCGCAACGTCCTCATTGTCGATGATGTGCTCACCACAGGCAGCTCAATCAGTGC
CTTATCCCAAGTCCTAAACCAACTCGGCTGCCAACAGATCTATAGTGCCTGCGTAGCAGCCGCACAAGTAAAACCGCCTA
ACTCAGTTGATTTTGCTGACACCACGGAATCACAATGTCTTTCGTTAAGGGTGCCAATAAAGTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(116-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

68.269

88.889

0.607
  comF Acinetobacter baumannii D1279779

67.788

88.889

0.603