Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NDN12_RS16780 Genome accession   NZ_CP098479
Coordinates   3665679..3667115 (+) Length   478 a.a.
NCBI ID   WP_167250200.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3660679..3672115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS16760 (NDN12_16755) - 3661374..3662012 (-) 639 WP_251110275.1 hypothetical protein -
  NDN12_RS16765 (NDN12_16760) pbpG 3662163..3663227 (-) 1065 WP_167250207.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NDN12_RS16770 (NDN12_16765) - 3663438..3664073 (+) 636 WP_167250204.1 response regulator -
  NDN12_RS16775 (NDN12_16770) pilS 3664091..3665656 (+) 1566 WP_167250202.1 ATP-binding protein Regulator
  NDN12_RS16780 (NDN12_16775) pilR 3665679..3667115 (+) 1437 WP_167250200.1 sigma-54 dependent transcriptional regulator Regulator
  NDN12_RS16785 (NDN12_16780) - 3667157..3668332 (-) 1176 WP_167250198.1 S41 family peptidase -
  NDN12_RS16790 (NDN12_16785) gpmI 3668342..3669886 (-) 1545 WP_251110276.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  NDN12_RS16795 (NDN12_16790) lptG 3670004..3671074 (-) 1071 WP_167250194.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 478 a.a.        Molecular weight: 53497.45 Da        Isoelectric Point: 6.2459

>NTDB_id=696132 NDN12_RS16780 WP_167250200.1 3665679..3667115(+) (pilR) [Acinetobacter sp. C26G]
MATKQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKKFFTEFQYDACLTDLNLPDGNGLDLVKHVTQNYPNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQMHLDQLIQKALNRPQPEQEAAETALENKLLIGRSAPIQQLRIALKKIARS
QAPVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLNMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLELLVQQGRFRQDLFFRIHVMDIVLPPLRERGQDILL
LANHFIQKISQEWDLPAKSLSSRAEQFLLQQYFPGNVRELRNIIERAITLSDDDNIDLAHLQTAPLRSSLANPTASFTNA
SPEEVEPVSHSASPAMSSKKLPPEGLERYLENIEKEILLNALNLTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTEDDE

Nucleotide


Download         Length: 1437 bp        

>NTDB_id=696132 NDN12_RS16780 WP_167250200.1 3665679..3667115(+) (pilR) [Acinetobacter sp. C26G]
ATGGCAACAAAACAACCACTCGTCTTACTGGTAGATGACGAAGAAGATTTATGTCTTCTAATGCAAATGACGCTTGCGCG
TATGGGCATCAAGACACATCTCGCCTATCGGGTTGAACAAGCAAAAAAATTCTTTACTGAGTTTCAGTATGATGCTTGTT
TAACAGATTTAAACCTTCCTGATGGTAATGGTCTGGATCTGGTCAAACATGTGACACAGAACTATCCCAATACCCCTATT
GCGGTGTTGACTGCCTATGGCAATATGGATATTGCCATTGCTGCGTTAAAAGCAGGCGCATTTGACTTTGTCAGTAAACC
TGTCAACCAAATGCACTTAGACCAATTAATTCAAAAAGCATTGAATCGTCCACAGCCAGAACAAGAAGCTGCTGAAACGG
CTTTAGAAAATAAGTTGCTAATTGGACGTTCTGCACCCATTCAACAGTTACGCATCGCTTTAAAGAAAATTGCACGTTCT
CAGGCGCCTGTATTTATTACCGGTGAATCAGGAACAGGTAAAGAAGTTGTTGCGAATTTGGTACATCGCTTGAGTAACCG
TAGTGAAGGACCTTTTATTGCCATTAACTGTGGTGCGATTCCAACAGAATTGATGGAAAGCGAGCTGTTCGGACATAAAA
AAGGCAGTTTCACTGGTGCAACGCAGGATAAGCAAGGCCTGATTCTTTCCGCACATGGCGGTAGTTTATTCTTGGATGAA
ATCGCTGAACTGCCTTTAAATATGCAGGTTAAATTACTGCGTGCTGTACAGGAAAAGAAAATTCGCCCAGTCGGTTCAGA
TCAAGAAATCGATGTGGATTTCCGTGTGATTAGTGCCAGCCACCAAGACTTGGAGTTGTTGGTACAACAAGGTCGTTTCC
GACAAGATTTATTCTTCCGTATTCATGTCATGGATATTGTGCTGCCTCCTTTACGTGAACGTGGGCAAGATATTCTGTTA
TTGGCGAATCACTTTATTCAAAAGATTAGTCAAGAATGGGATCTACCTGCGAAATCACTGTCTTCACGTGCAGAGCAGTT
CTTATTGCAGCAATATTTTCCAGGTAATGTGCGTGAATTACGCAATATCATTGAACGTGCAATCACCCTCAGTGATGATG
ACAATATTGACTTGGCACATCTCCAGACTGCACCTTTACGCAGTTCATTGGCAAACCCAACTGCTTCATTTACCAATGCT
TCACCAGAAGAAGTAGAGCCCGTATCGCATTCTGCCAGCCCAGCGATGAGCTCGAAAAAGCTTCCACCTGAAGGTTTGGA
ACGTTATTTAGAGAATATTGAAAAAGAAATTCTTCTAAATGCACTGAACCTCACGCATTGGAATCGAACTTTAGCTGCGA
AGAAGTTAGGTATGACCTTTCGCTCGCTACGTTATCGTTTGAAGAAGTTTGGTTTAGATACTGAAGATGATGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

82.845

100

0.828
  pilR Pseudomonas aeruginosa PAK

50.644

97.49

0.494