Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NDN12_RS01930 Genome accession   NZ_CP098479
Coordinates   411732..412415 (-) Length   227 a.a.
NCBI ID   WP_251110632.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 406732..417415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS01895 (NDN12_01895) mlaE 407149..407928 (+) 780 WP_065343266.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NDN12_RS01900 (NDN12_01900) - 407928..408605 (+) 678 WP_251110630.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NDN12_RS01905 (NDN12_01905) - 408625..409257 (+) 633 WP_251110631.1 ABC transporter substrate-binding protein -
  NDN12_RS01910 (NDN12_01910) - 409269..409556 (+) 288 WP_167248684.1 STAS domain-containing protein -
  NDN12_RS01915 (NDN12_01915) - 409602..410615 (-) 1014 WP_167248685.1 magnesium and cobalt transport protein CorA -
  NDN12_RS01920 (NDN12_01920) - 410788..411372 (+) 585 WP_167248686.1 TIGR00730 family Rossman fold protein -
  NDN12_RS01925 (NDN12_01925) - 411383..411778 (+) 396 WP_167248687.1 NUDIX domain-containing protein -
  NDN12_RS01930 (NDN12_01930) comF 411732..412415 (-) 684 WP_251110632.1 phosphoribosyltransferase family protein Machinery gene
  NDN12_RS01935 (NDN12_01935) recG 412408..414453 (-) 2046 WP_251110633.1 ATP-dependent DNA helicase RecG -
  NDN12_RS01940 (NDN12_01940) - 414472..415290 (+) 819 WP_167248690.1 NAD-dependent epimerase/dehydratase family protein -
  NDN12_RS01945 (NDN12_01945) - 415416..416393 (+) 978 WP_251110634.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25778.87 Da        Isoelectric Point: 9.2247

>NTDB_id=696107 NDN12_RS01930 WP_251110632.1 411732..412415(-) (comF) [Acinetobacter sp. C26G]
MFKRLGTSAQQIFDYFTPCSLCDIGMKHQFGVCYSCWQQLPWLKQSIERNQQQVFVACHYQYPIDRIIQQFKYEQKLHHQ
RMLNGLLLQLKLPKVHAIVPMPVSTDRLIERGFNQALLLAKALGSVLNVPVWQPVQRLAQHSQKGLSRLERLEDIEQQFV
AAPPNQIRYRKVLIIDDVLTTGSSISALSKVLTQLGCQQVYSACVAAAQTQKSSSSAFADTTESQSL

Nucleotide


Download         Length: 684 bp        

>NTDB_id=696107 NDN12_RS01930 WP_251110632.1 411732..412415(-) (comF) [Acinetobacter sp. C26G]
ATGTTTAAACGACTTGGAACATCAGCACAGCAGATTTTTGATTATTTTACACCGTGCAGTCTCTGCGACATCGGCATGAA
ACATCAGTTTGGTGTTTGTTACAGTTGTTGGCAACAACTGCCTTGGTTGAAGCAAAGTATTGAGCGTAACCAGCAACAGG
TCTTTGTTGCTTGCCATTATCAATATCCAATTGATCGCATTATTCAACAGTTTAAATATGAGCAAAAACTACATCATCAA
AGAATGCTGAATGGTCTGTTATTGCAACTCAAGCTTCCAAAAGTACATGCAATTGTACCCATGCCAGTTTCGACAGATCG
CTTGATTGAACGTGGCTTTAATCAAGCCTTGTTGTTGGCCAAAGCACTCGGCAGCGTTTTGAATGTTCCCGTTTGGCAGC
CTGTACAACGCTTGGCGCAGCACTCACAAAAAGGCCTGTCGCGCTTAGAACGACTCGAAGACATTGAACAACAATTTGTG
GCTGCACCACCGAATCAAATTCGTTATCGCAAAGTACTGATTATCGATGATGTACTGACCACAGGCAGTTCGATTAGTGC
TTTATCCAAGGTACTGACACAACTTGGCTGCCAACAGGTTTATAGTGCCTGCGTAGCAGCCGCACAAACTCAGAAATCTA
GCTCATCTGCTTTTGCTGACACCACGGAATCACAATCTCTTTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(157-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

64.286

92.511

0.595
  comF Acinetobacter baumannii strain A118

63.81

92.511

0.59