Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC855_RS11090 Genome accession   NZ_CP098472
Coordinates   2109303..2109716 (-) Length   137 a.a.
NCBI ID   WP_229930362.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10612     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2104303..2114716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC855_RS11045 (NC855_10965) - 2104322..2104665 (-) 344 Protein_2132 pilin -
  NC855_RS12040 - 2104719..2104871 (-) 153 Protein_2133 pilin -
  NC855_RS11055 (NC855_10975) - 2105005..2105398 (-) 394 Protein_2134 pilin -
  NC855_RS11060 (NC855_10980) - 2105935..2106278 (-) 344 Protein_2135 pilin -
  NC855_RS11065 (NC855_10985) - 2106278..2106618 (-) 341 Protein_2136 pilin -
  NC855_RS11070 (NC855_10990) - 2106618..2107010 (-) 393 Protein_2137 pilin -
  NC855_RS11075 (NC855_11850) - 2107760..2108023 (-) 264 WP_411268514.1 hypothetical protein -
  NC855_RS11080 (NC855_11000) - 2108052..2108390 (-) 339 Protein_2139 pilin -
  NC855_RS11085 (NC855_11005) - 2108390..2108747 (-) 358 Protein_2140 pilin -
  NC855_RS11090 (NC855_11010) pilE 2109303..2109716 (-) 414 WP_229930362.1 pilin Machinery gene
  NC855_RS11095 (NC855_11015) lpxC 2109822..2110745 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC855_RS11105 (NC855_11025) - 2111247..2111615 (-) 369 Protein_2143 pilin -
  NC855_RS11110 (NC855_11030) - 2111656..2111994 (-) 339 Protein_2144 pilin -
  NC855_RS11115 (NC855_11035) - 2112035..2112250 (-) 216 Protein_2145 pilin -
  NC855_RS11120 (NC855_11040) - 2112623..2112754 (-) 132 WP_010356054.1 hypothetical protein -
  NC855_RS11125 (NC855_11045) - 2112836..2113524 (-) 689 Protein_2147 SprT family zinc-dependent metalloprotease -
  NC855_RS11130 (NC855_11050) - 2113521..2114264 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 15074.93 Da        Isoelectric Point: 8.4754

>NTDB_id=696004 NC855_RS11090 WP_229930362.1 2109303..2109716(-) (pilE) [Neisseria gonorrhoeae strain 10612]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKEVKVENGVVTATMKSDGVNKEIK
DKRLSLWAKRQAGSVKWFCGQPVKRNAKDNDTVANDATNAIETKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=696004 NC855_RS11090 WP_229930362.1 2109303..2109716(-) (pilE) [Neisseria gonorrhoeae strain 10612]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTTACCGCCACAATGAAATCAGACGGCGTAAACAAAGAAATCAAA
GACAAAAGACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

69.065

100

0.701
  pilE Neisseria gonorrhoeae strain FA1090

69.565

100

0.701