Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC853_RS10910 Genome accession   NZ_CP098468
Coordinates   2077787..2078119 (-) Length   110 a.a.
NCBI ID   WP_396888878.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10328     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2072787..2083119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC853_RS10885 (NC853_10785) thiC 2073347..2075248 (+) 1902 WP_003686973.1 phosphomethylpyrimidine synthase ThiC -
  NC853_RS10890 (NC853_10790) - 2075737..2076099 (-) 363 Protein_2098 pilin -
  NC853_RS10895 (NC853_10795) - 2076139..2076492 (-) 354 Protein_2099 pilin -
  NC853_RS10900 (NC853_10800) - 2076519..2076878 (-) 360 Protein_2100 pilin -
  NC853_RS10905 (NC853_10805) - 2076918..2077322 (-) 405 Protein_2101 pilin -
  NC853_RS10910 (NC853_10810) pilE 2077787..2078119 (-) 333 WP_396888878.1 pilin Machinery gene
  NC853_RS10915 (NC853_10815) - 2078200..2078574 (-) 375 Protein_2103 pilin -
  NC853_RS10920 (NC853_10820) - 2079042..2079398 (-) 357 Protein_2104 pilin -
  NC853_RS10925 (NC853_10825) - 2079439..2079759 (-) 321 Protein_2105 pilin -
  NC853_RS10930 (NC853_10830) - 2079778..2080122 (-) 345 Protein_2106 pilin -
  NC853_RS10935 (NC853_10835) - 2080126..2080434 (+) 309 Protein_2107 NAD(P)-dependent oxidoreductase -
  NC853_RS10940 (NC853_10840) metG 2080509..2082563 (-) 2055 WP_003699323.1 methionine--tRNA ligase -

Sequence

Protein


Download         Length: 110 a.a.        Molecular weight: 11962.68 Da        Isoelectric Point: 10.2382

>NTDB_id=695902 NC853_RS10910 WP_396888878.1 2077787..2078119(-) (pilE) [Neisseria gonorrhoeae strain 10328]
MAGKQHFCRRGIPPAEIKGKYVKEVEVKNGVVTAKMKSDGVNKEIKDKRLSLWAKRENGSVKWFCGQPVTRADDAVKAGT
DAVTADTTGKDKIETKHLPSTCRDTSSAGT

Nucleotide


Download         Length: 333 bp        

>NTDB_id=695902 NC853_RS10910 WP_396888878.1 2077787..2078119(-) (pilE) [Neisseria gonorrhoeae strain 10328]
ATGGCCGGAAAACAACACTTCTGCCGGCGTGGCATCCCCCCCGCCGAAATCAAAGGCAAATATGTTAAAGAGGTTGAAGT
TAAAAACGGCGTCGTCACCGCCAAAATGAAATCAGACGGCGTAAACAAAGAAATCAAAGACAAAAGACTCTCCCTGTGGG
CCAAGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCGCCGACGACGCCGTCAAAGCCGGCACC
GACGCCGTCACCGCCGACACCACCGGCAAAGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGTCATC
TGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(15-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

71.579

86.364

0.618
  pilE Neisseria gonorrhoeae strain FA1090

56.522

100

0.591