Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC852_RS11090 Genome accession   NZ_CP098466
Coordinates   2108226..2108642 (-) Length   138 a.a.
NCBI ID   WP_263584079.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10720     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103226..2113642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC852_RS11055 (NC852_10975) - 2104270..2104428 (+) 159 WP_167550564.1 hypothetical protein -
  NC852_RS11060 (NC852_10980) - 2104402..2105214 (-) 813 WP_263584116.1 opacity family porin -
  NC852_RS12030 pilE 2105649..2105813 (-) 165 WP_003699316.1 hypothetical protein Machinery gene
  NC852_RS11065 (NC852_10985) pilE 2105786..2106154 (-) 369 WP_406946866.1 pilin Machinery gene
  NC852_RS11070 (NC852_10990) - 2106523..2106666 (-) 144 WP_050303184.1 hypothetical protein -
  NC852_RS11075 (NC852_10995) - 2106771..2106851 (-) 81 Protein_2136 pilin -
  NC852_RS11080 (NC852_11000) - 2106922..2107292 (-) 371 Protein_2137 pilin -
  NC852_RS11085 (NC852_11005) - 2107332..2107736 (-) 405 Protein_2138 pilin -
  NC852_RS11090 (NC852_11010) pilE 2108226..2108642 (-) 417 WP_263584079.1 pilin Machinery gene
  NC852_RS11095 (NC852_11015) lpxC 2108748..2109671 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC852_RS11925 - 2110173..2110889 (-) 717 WP_406946867.1 pilin -
  NC852_RS11115 (NC852_11035) - 2110915..2111130 (-) 216 Protein_2142 pilin -
  NC852_RS11120 (NC852_11040) - 2111503..2111634 (-) 132 WP_010356054.1 hypothetical protein -
  NC852_RS11125 (NC852_11045) - 2111716..2112404 (-) 689 Protein_2144 SprT family zinc-dependent metalloprotease -
  NC852_RS11130 (NC852_11050) - 2112401..2113144 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15003.76 Da        Isoelectric Point: 7.8482

>NTDB_id=695854 NC852_RS11090 WP_263584079.1 2108226..2108642(-) (pilE) [Neisseria gonorrhoeae strain 10720]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGKWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQDGSVKWFCGQPVKRNAKDNDTVANDATNAIETKHLPSTCRDTSSAGT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=695854 NC852_RS11090 WP_263584079.1 2108226..2108642(-) (pilE) [Neisseria gonorrhoeae strain 10720]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCAAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCAACGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATACGT
CATCTGCCGGTACGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.453

99.275

0.739
  pilE Neisseria gonorrhoeae MS11

69.784

100

0.703