Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | NC851_RS03995 | Genome accession | NZ_CP098464 |
| Coordinates | 770875..772620 (+) | Length | 581 a.a. |
| NCBI ID | WP_003693088.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10269 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 735772..811181 | 770875..772620 | within | 0 |
| IS/Tn | 773307..774308 | 770875..772620 | flank | 687 |
Gene organization within MGE regions
Location: 735772..811181
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NC851_RS03825 (NC851_03785) | - | 735772..736842 (-) | 1071 | WP_003693067.1 | tyrosine-type recombinase/integrase | - |
| NC851_RS03830 (NC851_03790) | - | 737051..737830 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| NC851_RS03835 (NC851_11715) | - | 738122..738562 (-) | 441 | WP_267736602.1 | hypothetical protein | - |
| NC851_RS03840 (NC851_03795) | dinB | 738661..739719 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| NC851_RS03845 (NC851_03800) | rep | 739789..741804 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| NC851_RS03850 (NC851_03805) | aroD | 741824..742588 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| NC851_RS03855 (NC851_03810) | recA | 742788..743834 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| NC851_RS03860 (NC851_03815) | - | 744487..744822 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NC851_RS03865 (NC851_03820) | dnaX | 744903..747026 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| NC851_RS03870 (NC851_03825) | mutL | 747121..749085 (-) | 1965 | WP_003699962.1 | DNA mismatch repair endonuclease MutL | - |
| NC851_RS03875 (NC851_03830) | - | 749229..749414 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| NC851_RS03880 (NC851_03835) | - | 749425..750093 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| NC851_RS03885 (NC851_03840) | - | 750093..750806 (+) | 714 | WP_003693072.1 | tetratricopeptide repeat protein | - |
| NC851_RS03890 (NC851_03845) | purE | 750854..751339 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| NC851_RS03895 (NC851_03850) | - | 751551..752416 (-) | 866 | Protein_761 | transposase | - |
| NC851_RS03900 (NC851_03855) | - | 752733..753098 (+) | 366 | Protein_762 | transposase | - |
| NC851_RS03905 (NC851_03860) | - | 753105..754130 (+) | 1026 | Protein_763 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NC851_RS03910 (NC851_03865) | - | 754325..754981 (-) | 657 | WP_003693075.1 | response regulator | - |
| NC851_RS03915 (NC851_03870) | - | 754978..756747 (-) | 1770 | WP_003699959.1 | histidine kinase | - |
| NC851_RS03920 (NC851_03875) | - | 756954..757568 (+) | 615 | WP_003698471.1 | molybdenum cofactor guanylyltransferase | - |
| NC851_RS03925 (NC851_03880) | - | 757730..758347 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| NC851_RS03930 (NC851_03885) | - | 758355..759218 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| NC851_RS03935 (NC851_03890) | - | 759231..759665 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| NC851_RS03940 (NC851_03895) | rpe | 759811..760494 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| NC851_RS03945 (NC851_03900) | ruvB | 760739..761770 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| NC851_RS03950 (NC851_03905) | - | 761852..762160 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| NC851_RS03955 (NC851_03910) | - | 762579..763811 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| NC851_RS03960 (NC851_03915) | - | 763890..765518 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| NC851_RS03965 (NC851_03920) | - | 765668..766042 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| NC851_RS03970 (NC851_03925) | - | 766091..767629 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| NC851_RS03975 (NC851_03930) | recR | 767696..768313 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| NC851_RS03980 (NC851_03935) | - | 768369..768647 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| NC851_RS03985 (NC851_03940) | - | 768873..770120 (+) | 1248 | WP_003693086.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| NC851_RS03990 (NC851_03945) | lolD | 770113..770808 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| NC851_RS03995 (NC851_03950) | recD | 770875..772620 (+) | 1746 | WP_003693088.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| NC851_RS04000 (NC851_03955) | - | 772692..773338 (-) | 647 | Protein_782 | methyltransferase | - |
| NC851_RS04005 (NC851_03960) | - | 773346..774308 (+) | 963 | WP_260253278.1 | transposase | - |
| NC851_RS04010 (NC851_03965) | - | 774437..774897 (-) | 461 | Protein_784 | methyltransferase | - |
| NC851_RS04015 (NC851_03970) | lon | 775149..777611 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| NC851_RS04020 (NC851_03975) | - | 777793..778062 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| NC851_RS04025 (NC851_03980) | - | 778239..778673 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| NC851_RS04030 (NC851_03985) | - | 778666..779973 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| NC851_RS04035 (NC851_03990) | - | 780169..780540 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| NC851_RS04040 (NC851_03995) | - | 780617..782539 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| NC851_RS04045 (NC851_04000) | - | 782526..782921 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| NC851_RS04050 (NC851_04005) | - | 783012..783524 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| NC851_RS04055 (NC851_04010) | - | 783969..784664 (-) | 696 | WP_020996819.1 | DUF4400 domain-containing protein | - |
| NC851_RS04060 (NC851_04015) | traD | 784654..786696 (-) | 2043 | WP_229931471.1 | type IV conjugative transfer system coupling protein TraD | - |
| NC851_RS04065 (NC851_04020) | mobH | 786693..789245 (-) | 2553 | WP_003693100.1 | MobH family relaxase | - |
| NC851_RS04070 (NC851_04025) | - | 789242..789661 (-) | 420 | WP_003693104.1 | hypothetical protein | - |
| NC851_RS04075 (NC851_04030) | - | 790171..790632 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| NC851_RS04080 (NC851_04035) | - | 790602..791123 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| NC851_RS04085 (NC851_04040) | traA | 791179..791475 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| NC851_RS04090 (NC851_04045) | traL | 791497..791778 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| NC851_RS04095 (NC851_04050) | - | 791775..792440 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| NC851_RS04100 (NC851_04055) | - | 792442..793176 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| NC851_RS04105 (NC851_04060) | - | 793178..794491 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| NC851_RS04110 (NC851_04065) | - | 794501..795220 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| NC851_RS04115 (NC851_04070) | - | 795217..795798 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| NC851_RS04120 (NC851_04075) | traC | 795808..798384 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| NC851_RS04125 (NC851_04080) | - | 798412..798960 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| NC851_RS04130 (NC851_04085) | - | 798960..799505 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| NC851_RS04135 (NC851_04090) | - | 799514..800170 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| NC851_RS04140 (NC851_04095) | - | 800167..801285 (+) | 1119 | WP_003695266.1 | TraU family protein | - |
| NC851_RS04145 (NC851_11720) | trbC | 801300..802052 (+) | 753 | WP_033909961.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NC851_RS04150 (NC851_04110) | - | 802049..803293 (+) | 1245 | WP_033909962.1 | hypothetical protein | - |
| NC851_RS04155 (NC851_04115) | traN | 803332..804873 (+) | 1542 | WP_229433390.1 | conjugal transfer protein TraN | - |
| NC851_RS04160 (NC851_04120) | - | 804860..805285 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| NC851_RS04165 (NC851_04125) | - | 805297..806073 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| NC851_RS04170 (NC851_04130) | - | 806245..807756 (+) | 1512 | WP_229931472.1 | conjugal transfer protein TraH | - |
| NC851_RS04175 (NC851_04135) | - | 807763..810675 (+) | 2913 | WP_033911086.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NC851_RS04180 (NC851_04140) | - | 810738..811181 (+) | 444 | WP_080281753.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63125.92 Da Isoelectric Point: 5.8825
>NTDB_id=695782 NC851_RS03995 WP_003693088.1 770875..772620(+) (recD) [Neisseria gonorrhoeae strain 10269]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=695782 NC851_RS03995 WP_003693088.1 770875..772620(+) (recD) [Neisseria gonorrhoeae strain 10269]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.484 |
100 |
0.995 |