Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NC849_RS10335 Genome accession   NZ_CP098462
Coordinates   1962864..1963259 (+) Length   131 a.a.
NCBI ID   WP_003703428.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9460     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1957864..1968259
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC849_RS10330 (NC849_10255) - 1962643..1962759 (+) 117 Protein_1988 competence protein ComE -
  NC849_RS10335 (NC849_10260) comE 1962864..1963259 (+) 396 WP_003703428.1 helix-hairpin-helix domain-containing protein Machinery gene
  NC849_RS12090 - 1963193..1963340 (-) 148 Protein_1990 peptidase -
  NC849_RS10340 (NC849_10265) - 1963783..1964112 (-) 330 Protein_1991 transposase -
  NC849_RS10345 (NC849_10270) dnaJ 1964246..1965367 (+) 1122 WP_003703320.1 molecular chaperone DnaJ -
  NC849_RS10350 (NC849_10275) - 1965562..1967580 (+) 2019 WP_003703318.1 OPT family oligopeptide transporter -
  NC849_RS10355 (NC849_10280) rfbC 1967624..1968181 (-) 558 WP_003690171.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 13796.61 Da        Isoelectric Point: 10.8790

>NTDB_id=695755 NC849_RS10335 WP_003703428.1 1962864..1963259(+) (comE) [Neisseria gonorrhoeae strain 9460]
MSRGGATPYRFLLIRHIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINAASQQELEALPGIGPAKAKAIAEY
RAQNGAFKSVDDLIKVKGIGPAVLAKLKDQASVGAPAPKGPAKPVLPAVKK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=695755 NC849_RS10335 WP_003703428.1 1962864..1963259(+) (comE) [Neisseria gonorrhoeae strain 9460]
TTGAGCCGGGGCGGGGCAACGCCGTACCGGTTTTTGTTAATCCGCCATATCGTCGCAAGATGCGGTTTGTTGTTTGCAAC
CCTTAAAGGAAAAACCATGAAAAAAATGTTTGTATTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAA
ACATCAATGCGGCTTCGCAGCAGGAGCTGGAGGCGCTGCCGGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATAC
CGCGCGCAAAACGGCGCGTTCAAGTCTGTGGACGATTTGATCAAGGTGAAGGGCATCGGTCCGGCGGTGCTGGCGAAGCT
GAAAGACCAGGCTTCCGTCGGCGCGCCCGCACCAAAAGGCCCCGCCAAACCGGTGCTGCCTGCGGTTAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1
  comE Neisseria gonorrhoeae MS11

100

100

1