Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC849_RS09395 Genome accession   NZ_CP098462
Coordinates   1792431..1792847 (+) Length   138 a.a.
NCBI ID   WP_311201956.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 9460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1787431..1797847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC849_RS09360 (NC849_09290) - 1788672..1789292 (-) 621 WP_003696151.1 fused MFS/spermidine synthase -
  NC849_RS09365 (NC849_09295) - 1789491..1789867 (-) 377 Protein_1807 transposase -
  NC849_RS09370 (NC849_09300) - 1790176..1790301 (-) 126 Protein_1808 IS110 family transposase -
  NC849_RS09375 (NC849_09305) - 1790867..1791250 (+) 384 Protein_1809 pilin -
  NC849_RS09380 (NC849_09310) - 1791232..1791576 (+) 345 Protein_1810 pilin -
  NC849_RS09385 (NC849_09315) - 1791616..1791984 (+) 369 Protein_1811 pilin -
  NC849_RS09390 (NC849_09320) - 1792024..1792392 (+) 369 Protein_1812 pilin -
  NC849_RS09395 (NC849_09325) pilE 1792431..1792847 (+) 417 WP_311201956.1 pilin Machinery gene
  NC849_RS09400 (NC849_09330) - 1793164..1793541 (+) 378 Protein_1814 pilin -
  NC849_RS09405 (NC849_09335) lpxC 1794035..1794958 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC849_RS09410 (NC849_09340) - 1795086..1795481 (+) 396 Protein_1816 pilin -
  NC849_RS09415 (NC849_09345) - 1795599..1795673 (+) 75 Protein_1817 pilin -
  NC849_RS09420 (NC849_09350) - 1796295..1796794 (+) 500 Protein_1818 pilin -
  NC849_RS09425 - 1797099..1797224 (-) 126 WP_260245428.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14785.92 Da        Isoelectric Point: 10.3241

>NTDB_id=695749 NC849_RS09395 WP_311201956.1 1792431..1792847(+) (pilE) [Neisseria gonorrhoeae strain 9460]
MASPAEIKGKYVKSVTVAKGVVTAEMKPSGVNKEIQGKKLSLWGRRENGSVKWFCGQPVTRAKAKDAGAADDAVTDAADN
NKIDTKHLPSTCRDKSSAGCIETPPTAFYKNTQTVIPTKAGIRNAKSKETVLPDKFPH

Nucleotide


Download         Length: 417 bp        

>NTDB_id=695749 NC849_RS09395 WP_311201956.1 1792431..1792847(+) (pilE) [Neisseria gonorrhoeae strain 9460]
GTGGCATCCCCCGCCGAAATCAAAGGCAAATATGTTAAAAGCGTTACGGTCGCAAAAGGCGTCGTTACCGCCGAAATGAA
ACCAAGCGGCGTAAACAAAGAAATCCAAGGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGT
TCTGCGGACAGCCGGTTACGCGCGCCAAAGCCAAAGACGCCGGCGCCGCCGACGACGCCGTCACCGACGCCGCCGACAAC
AACAAAATCGACACCAAGCACCTGCCGTCAACCTGCCGCGATAAATCATCTGCCGGTTGCATAGAAACACCACCTACGGC
TTTCTATAAAAATACCCAAACCGTCATTCCCACGAAAGCGGGAATCCGGAACGCAAAATCTAAAGAAACCGTTTTACCCG
ATAAGTTTCCGCACTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-93)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

69.388

71.014

0.493
  pilE Neisseria gonorrhoeae MS11

72.34

68.116

0.493