Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC848_RS11050 Genome accession   NZ_CP098460
Coordinates   2101057..2101470 (-) Length   137 a.a.
NCBI ID   WP_260240054.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10814     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2096057..2106470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC848_RS11035 (NC848_10940) msrAB 2096599..2098167 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC848_RS11040 (NC848_10945) pilA 2098313..2099566 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC848_RS11045 (NC848_10950) - 2099832..2100539 (-) 708 WP_260240053.1 opacity family porin -
  NC848_RS11050 (NC848_10955) pilE 2101057..2101470 (-) 414 WP_260240054.1 pilin Machinery gene
  NC848_RS11055 (NC848_10960) lpxC 2101576..2102499 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC848_RS11065 (NC848_10970) - 2102991..2103347 (-) 357 Protein_2132 pilin -
  NC848_RS11070 (NC848_10975) - 2103388..2103603 (-) 216 Protein_2133 pilin -
  NC848_RS11075 (NC848_10980) - 2103976..2104107 (-) 132 WP_010356054.1 hypothetical protein -
  NC848_RS11080 (NC848_10985) - 2104189..2104877 (-) 689 Protein_2135 SprT family zinc-dependent metalloprotease -
  NC848_RS11085 (NC848_10990) - 2104874..2105617 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  NC848_RS11090 (NC848_10995) gmhB 2105647..2106210 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 137 a.a.        Molecular weight: 14888.67 Da        Isoelectric Point: 7.1348

>NTDB_id=695708 NC848_RS11050 WP_260240054.1 2101057..2101470(-) (pilE) [Neisseria gonorrhoeae strain 10814]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNHGEWPEDNDKAGVASPDKIIGKYVKQVEVKNGVVTAEMASTGVNKEIQ
GKKLSLWAKRQAGSVKWFCGQPVKRAAKDNDTVANDATNAIDTKHLPSTCRDPFSAS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=695708 NC848_RS11050 WP_260240054.1 2101057..2101470(-) (pilE) [Neisseria gonorrhoeae strain 10814]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATCACGGCGAATGGCCGGAAGACAACGACAAGGCCGGCGTGGCATCCCCCGACAAAATCATAGGCA
AATATGTTAAGCAAGTTGAAGTCAAAAACGGCGTCGTCACCGCCGAAATGGCTTCAACCGGCGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGCCGC
CAAAGACAACGACACCGTTGCCAACGACGCCACCAACGCCATCGACACCAAGCACCTGCCGTCAACCTGCCGCGACCCGT
TCTCTGCTAGCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.188

100

0.737
  pilE Neisseria gonorrhoeae MS11

70.504

100

0.715