Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   NCL52_RS17820 Genome accession   NZ_CP098417
Coordinates   3469852..3470541 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain N2-10     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3464852..3475541
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS17785 (NCL52_17785) flgN 3465036..3465518 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NCL52_RS17790 (NCL52_17790) flgM 3465534..3465800 (-) 267 WP_134982987.1 flagellar biosynthesis anti-sigma factor FlgM -
  NCL52_RS17795 (NCL52_17795) yvyF 3465881..3466300 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NCL52_RS17800 (NCL52_17800) comFC 3466374..3467096 (-) 723 WP_134982986.1 comF operon protein ComFC Machinery gene
  NCL52_RS17805 (NCL52_17805) comFB 3467060..3467356 (-) 297 WP_015483764.1 late competence protein ComFB -
  NCL52_RS17810 (NCL52_17810) comFA 3467416..3468803 (-) 1388 Protein_3454 ATP-dependent helicase ComFA -
  NCL52_RS17815 (NCL52_17815) fakBA 3468909..3469754 (-) 846 WP_137201059.1 DegV family protein -
  NCL52_RS17820 (NCL52_17820) degU 3469852..3470541 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NCL52_RS17825 (NCL52_17825) degS 3470624..3471781 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  NCL52_RS17830 (NCL52_17830) yvyE 3471998..3472651 (+) 654 WP_003227979.1 YigZ family protein -
  NCL52_RS17835 (NCL52_17835) tagV 3472651..3473817 (+) 1167 WP_137201061.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  NCL52_RS17840 (NCL52_17840) tagO 3473890..3474966 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=695409 NCL52_RS17820 WP_003219701.1 3469852..3470541(-) (degU) [Bacillus subtilis strain N2-10]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=695409 NCL52_RS17820 WP_003219701.1 3469852..3470541(-) (degU) [Bacillus subtilis strain N2-10]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCAAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGTGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1