Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   NCL52_RS17800 Genome accession   NZ_CP098417
Coordinates   3466374..3467096 (-) Length   240 a.a.
NCBI ID   WP_134982986.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3461374..3472096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS17765 (NCL52_17765) fliW 3461513..3461944 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  NCL52_RS17770 (NCL52_17770) yviE 3461965..3462540 (-) 576 WP_134982989.1 DUF6470 family protein -
  NCL52_RS17775 (NCL52_17775) flgL 3462587..3463483 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  NCL52_RS17780 (NCL52_17780) flgK 3463494..3465017 (-) 1524 WP_134982988.1 flagellar hook-associated protein FlgK -
  NCL52_RS17785 (NCL52_17785) flgN 3465036..3465518 (-) 483 WP_014481048.1 flagellar protein FlgN -
  NCL52_RS17790 (NCL52_17790) flgM 3465534..3465800 (-) 267 WP_134982987.1 flagellar biosynthesis anti-sigma factor FlgM -
  NCL52_RS17795 (NCL52_17795) yvyF 3465881..3466300 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  NCL52_RS17800 (NCL52_17800) comFC 3466374..3467096 (-) 723 WP_134982986.1 comF operon protein ComFC Machinery gene
  NCL52_RS17805 (NCL52_17805) comFB 3467060..3467356 (-) 297 WP_015483764.1 late competence protein ComFB -
  NCL52_RS17810 (NCL52_17810) comFA 3467416..3468803 (-) 1388 Protein_3454 ATP-dependent helicase ComFA -
  NCL52_RS17815 (NCL52_17815) fakBA 3468909..3469754 (-) 846 WP_137201059.1 DegV family protein -
  NCL52_RS17820 (NCL52_17820) degU 3469852..3470541 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  NCL52_RS17825 (NCL52_17825) degS 3470624..3471781 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27538.77 Da        Isoelectric Point: 9.1349

>NTDB_id=695408 NCL52_RS17800 WP_134982986.1 3466374..3467096(-) (comFC) [Bacillus subtilis strain N2-10]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSSEGMDIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=695408 NCL52_RS17800 WP_134982986.1 3466374..3467096(-) (comFC) [Bacillus subtilis strain N2-10]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGGCATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCTCACCACCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCATCAGAAGGTATGGATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGTTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.333

100

0.983