Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BVS141_RS17055 Genome accession   NZ_AP018402
Coordinates   3437626..3438789 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain S141     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3432626..3443789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVS141_RS17025 (BVS141_33790) - 3432891..3433310 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BVS141_RS17030 comFC 3433384..3434073 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  BVS141_RS17035 (BVS141_33810) - 3434079..3434363 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BVS141_RS17040 (BVS141_33820) comFA 3434421..3435806 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  BVS141_RS17045 (BVS141_33830) - 3435914..3436762 (-) 849 WP_003151387.1 DegV family protein -
  BVS141_RS17050 (BVS141_33840) degU 3436860..3437549 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BVS141_RS17055 (BVS141_33850) degS 3437626..3438789 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BVS141_RS17060 (BVS141_33860) - 3439012..3439659 (+) 648 WP_007614107.1 YigZ family protein -
  BVS141_RS17065 (BVS141_33870) - 3439664..3440884 (+) 1221 WP_012118574.1 LCP family protein -
  BVS141_RS17070 (BVS141_33880) - 3440983..3442059 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  BVS141_RS17075 (BVS141_33890) tuaH 3442192..3443388 (-) 1197 WP_060562493.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=69540 BVS141_RS17055 WP_007407484.1 3437626..3438789(-) (degS) [Bacillus velezensis strain S141]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=69540 BVS141_RS17055 WP_007407484.1 3437626..3438789(-) (degS) [Bacillus velezensis strain S141]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTAGGTCTTCAGGAAATCATTGAAC
GGTCAGAATCGTTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCTGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAATGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment