Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BVS141_RS17040 Genome accession   NZ_AP018402
Coordinates   3434421..3435806 (-) Length   461 a.a.
NCBI ID   WP_060562494.1    Uniprot ID   -
Organism   Bacillus velezensis strain S141     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3429421..3440806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVS141_RS17005 (BVS141_33750) flgL 3429596..3430513 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  BVS141_RS17010 (BVS141_33760) flgK 3430525..3432042 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  BVS141_RS17015 (BVS141_33770) - 3432058..3432540 (-) 483 WP_003151394.1 flagellar protein FlgN -
  BVS141_RS17020 (BVS141_33780) flgM 3432555..3432821 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  BVS141_RS17025 (BVS141_33790) - 3432891..3433310 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  BVS141_RS17030 comFC 3433384..3434073 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  BVS141_RS17035 (BVS141_33810) - 3434079..3434363 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  BVS141_RS17040 (BVS141_33820) comFA 3434421..3435806 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  BVS141_RS17045 (BVS141_33830) - 3435914..3436762 (-) 849 WP_003151387.1 DegV family protein -
  BVS141_RS17050 (BVS141_33840) degU 3436860..3437549 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BVS141_RS17055 (BVS141_33850) degS 3437626..3438789 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  BVS141_RS17060 (BVS141_33860) - 3439012..3439659 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52704.19 Da        Isoelectric Point: 10.2284

>NTDB_id=69538 BVS141_RS17040 WP_060562494.1 3434421..3435806(-) (comFA) [Bacillus velezensis strain S141]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQTPENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEEKGCLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEADLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQLQLPVFLFVPSVHVLKKTTDYFRKLNIRAEGVHAEDTFRKDKVKRFRNGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=69538 BVS141_RS17040 WP_060562494.1 3434421..3435806(-) (comFA) [Bacillus velezensis strain S141]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCTTTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAACCCCTGAAAACAG
CTGGGAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCAGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAAGAAAAAGGCTGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCGACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTTCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCTCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATTACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCGGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAAACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAGCATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(330-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.739

99.783

0.616

Multiple sequence alignment