Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   NCL52_RS01995 Genome accession   NZ_CP098417
Coordinates   371867..372265 (-) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 366867..377265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS01960 (NCL52_01960) - 367613..367810 (+) 198 WP_134982414.1 hypothetical protein -
  NCL52_RS01965 (NCL52_01965) yckC 367830..368285 (+) 456 WP_137200561.1 RDD family protein -
  NCL52_RS01970 (NCL52_01970) yckD 368367..368699 (+) 333 WP_137200563.1 YckD family protein -
  NCL52_RS01975 (NCL52_01975) - 368827..369249 (+) 423 WP_175405006.1 MarR family transcriptional regulator -
  NCL52_RS01980 (NCL52_01980) - 369237..369578 (+) 342 WP_032724911.1 DUF3147 family protein -
  NCL52_RS01985 (NCL52_01985) - 369597..370325 (+) 729 WP_021481826.1 AAA family ATPase -
  NCL52_RS01990 (NCL52_01990) bglC 370397..371830 (+) 1434 WP_134982418.1 6-phospho-beta-glucosidase -
  NCL52_RS01995 (NCL52_01995) nin/comJ 371867..372265 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  NCL52_RS02000 (NCL52_02000) nucA/comI 372292..372741 (-) 450 WP_024572180.1 DNA-entry nuclease Machinery gene
  NCL52_RS02005 (NCL52_02005) tlpC 372909..374633 (-) 1725 WP_137200565.1 methyl-accepting chemotaxis protein TlpC -
  NCL52_RS02010 (NCL52_02010) hxlB 374744..375301 (-) 558 WP_134982420.1 6-phospho-3-hexuloisomerase -
  NCL52_RS02015 (NCL52_02015) hxlA 375307..375939 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  NCL52_RS02020 (NCL52_02020) hxlR 376171..376533 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=695347 NCL52_RS01995 WP_015252845.1 371867..372265(-) (nin/comJ) [Bacillus subtilis strain N2-10]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=695347 NCL52_RS01995 WP_015252845.1 371867..372265(-) (nin/comJ) [Bacillus subtilis strain N2-10]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATACGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985