Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   NCY29_RS08435 Genome accession   NZ_CP098411
Coordinates   1757564..1758805 (-) Length   413 a.a.
NCBI ID   WP_063557721.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain 401     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752564..1763805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCY29_RS08430 (NCY29_08430) - 1755812..1757539 (-) 1728 WP_003575285.1 proline--tRNA ligase -
  NCY29_RS08435 (NCY29_08435) eeP 1757564..1758805 (-) 1242 WP_063557721.1 RIP metalloprotease RseP Regulator
  NCY29_RS08440 (NCY29_08440) - 1758822..1759610 (-) 789 WP_003565800.1 phosphatidate cytidylyltransferase -
  NCY29_RS08445 (NCY29_08445) - 1759646..1760398 (-) 753 WP_003575287.1 isoprenyl transferase -
  NCY29_RS08450 (NCY29_08450) frr 1760928..1761485 (-) 558 WP_003598868.1 ribosome recycling factor -
  NCY29_RS08455 (NCY29_08455) pyrH 1761485..1762204 (-) 720 WP_003565806.1 UMP kinase -
  NCY29_RS08460 (NCY29_08460) tsf 1762441..1763322 (-) 882 WP_003565808.1 translation elongation factor Ts -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45079.67 Da        Isoelectric Point: 8.6663

>NTDB_id=695323 NCY29_RS08435 WP_063557721.1 1757564..1758805(-) (eeP) [Lacticaseibacillus paracasei strain 401]
MTTIIAFIVIFCILVVVHEFGHFYFAKRSGILVREFSIGMGPKLWASHKNNTTYTLRLLPLGGYVRMAGWQDEEDEIKPG
TMLSLILNDQGKVVRINASDKTTLAGGMPVQVSRVDLVKDLVIEGYPNGDETALQTWQVDHDATIIEEDGTEVQIAPEDV
QFQNAPVWRRLLVNFAGPMNNFLLAILAFIIYGLFFGVQVLNTNQIGTVVPGYPAAEAGLKSNATVQTIDGQKMSSFTDL
SKIVSKNAGKSVTFTVKENGKSKNIVIKPNKEGKIGVEAHVDKSPANAIPFGFSQTWNLAVRTWDVLKSMVTGGFSLNKL
AGPVGIYTMTSQSAKGGIQGLLFFMGYLSLGLGITNLLPIPVLDGGKILLNLIEIIRRKPLKPETEGAVTMIGLGLMVLL
MLAVTINDIMRYF

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=695323 NCY29_RS08435 WP_063557721.1 1757564..1758805(-) (eeP) [Lacticaseibacillus paracasei strain 401]
ATGACCACTATCATCGCCTTTATCGTTATCTTCTGCATTCTTGTGGTAGTTCACGAGTTTGGCCATTTTTACTTTGCAAA
ACGCAGCGGCATTCTAGTCCGGGAATTTTCGATCGGTATGGGCCCGAAGCTGTGGGCGTCGCACAAGAACAATACGACCT
ACACGCTGCGGTTGCTACCACTTGGCGGATACGTCCGCATGGCTGGCTGGCAAGATGAGGAGGACGAGATTAAGCCCGGG
ACGATGCTGAGCCTGATTCTTAACGATCAAGGCAAGGTTGTCCGGATCAATGCCAGTGACAAAACGACTTTGGCCGGCGG
AATGCCTGTGCAAGTGAGTCGCGTCGATTTAGTTAAGGATCTGGTGATTGAAGGTTATCCAAACGGGGATGAAACAGCCT
TGCAAACTTGGCAGGTTGACCACGATGCGACGATCATTGAAGAAGACGGAACCGAGGTTCAGATCGCGCCAGAAGACGTT
CAGTTTCAAAACGCCCCGGTTTGGCGCCGGTTATTGGTCAACTTCGCCGGTCCGATGAATAACTTCTTACTCGCGATTCT
AGCTTTTATTATTTACGGTCTGTTTTTTGGTGTTCAGGTGCTCAATACCAACCAAATCGGAACAGTTGTGCCAGGTTATC
CAGCCGCAGAAGCTGGTCTTAAGTCCAATGCGACGGTGCAAACGATTGACGGTCAAAAAATGTCATCATTCACGGATCTT
TCAAAGATCGTCAGTAAAAATGCCGGTAAATCAGTGACATTTACTGTGAAGGAAAACGGTAAAAGCAAGAACATCGTGAT
CAAGCCGAATAAAGAAGGCAAGATCGGGGTTGAAGCACACGTCGATAAGTCCCCAGCAAATGCCATTCCTTTTGGCTTTT
CTCAAACTTGGAATTTGGCTGTCCGCACTTGGGACGTGCTCAAATCCATGGTGACCGGCGGTTTTTCACTCAATAAACTT
GCTGGCCCGGTTGGTATTTATACCATGACGAGTCAAAGTGCCAAAGGCGGTATTCAAGGATTACTCTTCTTTATGGGTTA
CTTGAGTCTCGGCTTAGGGATTACCAATTTGTTGCCGATTCCAGTGCTTGATGGTGGTAAAATTCTTTTGAACCTGATCG
AAATTATTCGCCGTAAGCCATTAAAACCGGAAACGGAAGGCGCTGTGACCATGATTGGCCTGGGCCTGATGGTTCTATTA
ATGCTAGCGGTCACAATCAACGATATCATGCGCTACTTTTAA

Domains

Predicted by InterproScan.

Peptidase family M50 (Peptidase_M50)

(6-400)

PDZ domain (PDZ_6)

(206-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

49.292

100

0.506
  eeP Streptococcus thermophilus LMD-9

49.057

100

0.504