Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NBT14_RS05885 | Genome accession | NZ_CP098365 |
| Coordinates | 1213973..1214500 (-) | Length | 175 a.a. |
| NCBI ID | WP_164223991.1 | Uniprot ID | - |
| Organism | Weissella paramesenteroides strain LCW-28 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1183995..1228158 | 1213973..1214500 | within | 0 |
Gene organization within MGE regions
Location: 1183995..1228158
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBT14_RS05700 (NBT14_05680) | - | 1183995..1185098 (-) | 1104 | WP_404975354.1 | GH25 family lysozyme | - |
| NBT14_RS05705 (NBT14_05685) | - | 1185189..1185393 (-) | 205 | Protein_1071 | phage holin | - |
| NBT14_RS05710 (NBT14_05690) | - | 1185410..1185643 (-) | 234 | WP_404975355.1 | hypothetical protein | - |
| NBT14_RS05715 (NBT14_05695) | - | 1185656..1185925 (-) | 270 | WP_277375485.1 | hypothetical protein | - |
| NBT14_RS05720 (NBT14_05700) | - | 1185928..1186323 (-) | 396 | WP_277375486.1 | hypothetical protein | - |
| NBT14_RS05725 (NBT14_05705) | - | 1186338..1191125 (-) | 4788 | WP_404975357.1 | phage tail spike protein | - |
| NBT14_RS05730 (NBT14_05710) | - | 1191122..1191928 (-) | 807 | WP_277380224.1 | distal tail protein Dit | - |
| NBT14_RS05735 (NBT14_05715) | - | 1191947..1195444 (-) | 3498 | WP_404975358.1 | phage tail tape measure protein | - |
| NBT14_RS05740 (NBT14_05720) | - | 1195445..1195759 (-) | 315 | WP_277375490.1 | hypothetical protein | - |
| NBT14_RS05745 (NBT14_05725) | - | 1195870..1196208 (-) | 339 | WP_277375491.1 | tail assembly chaperone | - |
| NBT14_RS05750 (NBT14_05730) | - | 1196332..1196895 (-) | 564 | WP_277375492.1 | phage major tail protein, TP901-1 family | - |
| NBT14_RS05755 (NBT14_05735) | - | 1196911..1197306 (-) | 396 | WP_277375493.1 | hypothetical protein | - |
| NBT14_RS05760 (NBT14_05740) | - | 1197303..1197677 (-) | 375 | WP_002828433.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| NBT14_RS05765 (NBT14_05745) | - | 1197667..1197981 (-) | 315 | WP_277380228.1 | hypothetical protein | - |
| NBT14_RS05770 (NBT14_05750) | - | 1197991..1198335 (-) | 345 | WP_277375496.1 | phage head-tail connector protein | - |
| NBT14_RS05775 (NBT14_05755) | - | 1198353..1198634 (-) | 282 | WP_277375497.1 | phosphoenolpyruvate synthase | - |
| NBT14_RS05780 (NBT14_05760) | - | 1198700..1199527 (-) | 828 | WP_002828438.1 | N4-gp56 family major capsid protein | - |
| NBT14_RS05785 (NBT14_05765) | - | 1199531..1200127 (-) | 597 | WP_277375498.1 | DUF4355 domain-containing protein | - |
| NBT14_RS05790 (NBT14_05770) | - | 1200295..1201260 (-) | 966 | WP_404975359.1 | minor capsid protein | - |
| NBT14_RS05795 (NBT14_05775) | - | 1201250..1202743 (-) | 1494 | WP_404975360.1 | phage portal protein | - |
| NBT14_RS05800 (NBT14_05780) | - | 1202754..1204043 (-) | 1290 | WP_404975361.1 | PBSX family phage terminase large subunit | - |
| NBT14_RS05805 (NBT14_05785) | - | 1204036..1204542 (-) | 507 | WP_277380232.1 | terminase small subunit | - |
| NBT14_RS05810 (NBT14_05790) | - | 1204813..1205385 (-) | 573 | WP_404975362.1 | hypothetical protein | - |
| NBT14_RS05815 (NBT14_05795) | - | 1205962..1206168 (-) | 207 | WP_002828449.1 | CsbD family protein | - |
| NBT14_RS05820 (NBT14_05800) | - | 1206267..1206512 (-) | 246 | WP_002828450.1 | GlsB/YeaQ/YmgE family stress response membrane protein | - |
| NBT14_RS05830 (NBT14_05810) | - | 1206882..1207322 (-) | 441 | WP_404975363.1 | DUF722 domain-containing protein | - |
| NBT14_RS05835 (NBT14_05815) | - | 1207506..1209164 (+) | 1659 | WP_277375504.1 | hypothetical protein | - |
| NBT14_RS05840 (NBT14_05820) | - | 1209324..1209779 (-) | 456 | WP_040760818.1 | GAF domain-containing protein | - |
| NBT14_RS05845 (NBT14_05825) | pnuC | 1209847..1210542 (-) | 696 | WP_002828454.1 | nicotinamide riboside transporter PnuC | - |
| NBT14_RS05850 (NBT14_05830) | - | 1210667..1210852 (-) | 186 | WP_002828455.1 | hypothetical protein | - |
| NBT14_RS05855 (NBT14_05835) | - | 1210852..1211478 (-) | 627 | WP_404975364.1 | hypothetical protein | - |
| NBT14_RS05860 (NBT14_05840) | - | 1211478..1211723 (-) | 246 | WP_277375507.1 | hypothetical protein | - |
| NBT14_RS05865 (NBT14_05845) | - | 1211761..1212198 (-) | 438 | WP_277380235.1 | dTDP-glucose pyrophosphorylase | - |
| NBT14_RS05870 (NBT14_05850) | - | 1212186..1212356 (-) | 171 | WP_277375509.1 | hypothetical protein | - |
| NBT14_RS05875 (NBT14_05855) | - | 1212359..1213084 (-) | 726 | WP_164223985.1 | ATP-binding protein | - |
| NBT14_RS05880 (NBT14_05860) | - | 1213071..1213964 (-) | 894 | WP_404975365.1 | phage replisome organizer N-terminal domain-containing protein | - |
| NBT14_RS05885 (NBT14_05865) | ssb | 1213973..1214500 (-) | 528 | WP_164223991.1 | single-stranded DNA-binding protein | Machinery gene |
| NBT14_RS05890 (NBT14_05870) | - | 1214463..1215173 (-) | 711 | WP_404975366.1 | putative HNHc nuclease | - |
| NBT14_RS05895 (NBT14_05875) | - | 1215173..1215814 (-) | 642 | WP_150191260.1 | ERF family protein | - |
| NBT14_RS05900 (NBT14_05880) | - | 1215798..1215992 (-) | 195 | WP_150191261.1 | hypothetical protein | - |
| NBT14_RS05905 (NBT14_05885) | - | 1216071..1216430 (-) | 360 | WP_404975367.1 | hypothetical protein | - |
| NBT14_RS05910 (NBT14_05890) | - | 1216453..1216659 (-) | 207 | WP_404975368.1 | hypothetical protein | - |
| NBT14_RS05915 (NBT14_05895) | - | 1216772..1216981 (-) | 210 | WP_150191264.1 | hypothetical protein | - |
| NBT14_RS05920 (NBT14_05900) | - | 1216983..1217177 (-) | 195 | WP_150222728.1 | hypothetical protein | - |
| NBT14_RS05925 (NBT14_05905) | - | 1217295..1217507 (+) | 213 | WP_404975370.1 | hypothetical protein | - |
| NBT14_RS05930 (NBT14_05910) | - | 1217858..1218331 (+) | 474 | WP_277375520.1 | hypothetical protein | - |
| NBT14_RS05935 (NBT14_05915) | - | 1218462..1219193 (-) | 732 | WP_404975371.1 | ORF6C domain-containing protein | - |
| NBT14_RS05940 (NBT14_05920) | - | 1219206..1219424 (-) | 219 | WP_141926556.1 | helix-turn-helix domain-containing protein | - |
| NBT14_RS05945 (NBT14_05925) | - | 1219701..1220051 (+) | 351 | WP_404975372.1 | helix-turn-helix domain-containing protein | - |
| NBT14_RS05950 (NBT14_05930) | - | 1220129..1220620 (+) | 492 | WP_404975373.1 | hypothetical protein | - |
| NBT14_RS05955 (NBT14_05935) | - | 1220699..1221355 (+) | 657 | WP_404975374.1 | Ltp family lipoprotein | - |
| NBT14_RS05960 (NBT14_05940) | - | 1221527..1222603 (+) | 1077 | WP_404975375.1 | tyrosine-type recombinase/integrase | - |
| NBT14_RS05970 (NBT14_05950) | - | 1222898..1223404 (-) | 507 | WP_150177836.1 | antibiotic biosynthesis monooxygenase | - |
| NBT14_RS05975 (NBT14_05955) | - | 1223498..1224226 (-) | 729 | WP_002828485.1 | CPBP family intramembrane glutamic endopeptidase | - |
| NBT14_RS05980 (NBT14_05960) | - | 1224213..1224419 (-) | 207 | WP_040760843.1 | hypothetical protein | - |
| NBT14_RS05985 (NBT14_05965) | - | 1224424..1225260 (-) | 837 | WP_002828487.1 | Cof-type HAD-IIB family hydrolase | - |
| NBT14_RS05990 (NBT14_05970) | mscL | 1225440..1225832 (+) | 393 | WP_002828488.1 | large conductance mechanosensitive channel protein MscL | - |
| NBT14_RS05995 (NBT14_05975) | - | 1226023..1226661 (+) | 639 | WP_002828489.1 | deoxynucleoside kinase | - |
| NBT14_RS06000 (NBT14_05980) | - | 1226734..1228158 (-) | 1425 | WP_277380247.1 | C40 family peptidase | - |
Sequence
Protein
Download Length: 175 a.a. Molecular weight: 19569.44 Da Isoelectric Point: 9.5083
>NTDB_id=695222 NBT14_RS05885 WP_164223991.1 1213973..1214500(-) (ssb) [Weissella paramesenteroides strain LCW-28]
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENLAKMTAKGSLIGLEGRLQTR
SYDNQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVNQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
MINNVTLTGRLTKDMELKYTTSGTAVASATVAVERSFTDGNGERGSDFINFVIWRKAAENLAKMTAKGSLIGLEGRLQTR
SYDNQQGQKVFVTEVVVNNFSLLESKEVTDQRKQGGVNQPQQNNFNQQPQRQNNFNQQQAPQGNFNQQRQQPQQNNFGGS
QGYGNGNNFEDQLPF
Nucleotide
Download Length: 528 bp
>NTDB_id=695222 NBT14_RS05885 WP_164223991.1 1213973..1214500(-) (ssb) [Weissella paramesenteroides strain LCW-28]
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATCTAGCTAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGACTACAAACACGT
AGTTATGATAACCAGCAAGGACAAAAAGTATTTGTTACTGAAGTTGTCGTTAATAACTTCTCGCTATTAGAAAGCAAGGA
AGTTACTGACCAACGTAAGCAAGGCGGAGTTAATCAACCGCAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAGCAAAATAATTTTGGTGGATCA
CAGGGGTATGGCAACGGCAATAACTTTGAAGACCAATTACCATTCTAG
ATGATAAACAACGTCACACTAACTGGCAGACTAACTAAAGATATGGAGTTGAAATATACCACGTCAGGTACAGCCGTAGC
CAGTGCAACAGTAGCAGTTGAACGTTCATTTACTGACGGTAATGGTGAACGAGGTAGTGACTTTATTAACTTTGTTATTT
GGCGTAAGGCGGCTGAAAATCTAGCTAAAATGACCGCTAAAGGTTCATTGATTGGACTGGAAGGACGACTACAAACACGT
AGTTATGATAACCAGCAAGGACAAAAAGTATTTGTTACTGAAGTTGTCGTTAATAACTTCTCGCTATTAGAAAGCAAGGA
AGTTACTGACCAACGTAAGCAAGGCGGAGTTAATCAACCGCAGCAAAATAACTTTAATCAACAGCCACAGCGACAAAACA
ATTTCAACCAACAGCAAGCACCACAAGGAAACTTCAATCAACAACGCCAACAACCACAGCAAAATAATTTTGGTGGATCA
CAGGGGTATGGCAACGGCAATAACTTTGAAGACCAATTACCATTCTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.934 |
100 |
0.537 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
60.377 |
60.571 |
0.366 |