Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NBT14_RS01180 | Genome accession | NZ_CP098365 |
| Coordinates | 255132..255683 (+) | Length | 183 a.a. |
| NCBI ID | WP_002828738.1 | Uniprot ID | C5RAY6 |
| Organism | Weissella paramesenteroides strain LCW-28 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 251131..270105 | 255132..255683 | within | 0 |
Gene organization within MGE regions
Location: 251131..270105
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NBT14_RS01160 (NBT14_01160) | glmU | 251131..252513 (+) | 1383 | WP_395461886.1 | bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU | - |
| NBT14_RS01165 (NBT14_01165) | - | 252638..253624 (+) | 987 | WP_040760995.1 | ribose-phosphate diphosphokinase | - |
| NBT14_RS01170 (NBT14_01170) | - | 253691..254635 (+) | 945 | WP_277362283.1 | nucleoside hydrolase | - |
| NBT14_RS01175 (NBT14_01175) | rpsF | 254762..255061 (+) | 300 | WP_002828739.1 | 30S ribosomal protein S6 | - |
| NBT14_RS01180 (NBT14_01180) | ssb | 255132..255683 (+) | 552 | WP_002828738.1 | single-stranded DNA-binding protein | Machinery gene |
| NBT14_RS01185 (NBT14_01185) | rpsR | 255740..255982 (+) | 243 | WP_002828737.1 | 30S ribosomal protein S18 | - |
| NBT14_RS01190 (NBT14_01190) | - | 256082..256549 (+) | 468 | WP_277362282.1 | hypothetical protein | - |
| NBT14_RS01195 (NBT14_01195) | purE | 256817..257308 (+) | 492 | WP_150176799.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| NBT14_RS01200 (NBT14_01200) | purK | 257301..258422 (+) | 1122 | WP_002828733.1 | 5-(carboxyamino)imidazole ribonucleotide synthase | - |
| NBT14_RS01205 (NBT14_01205) | purC | 258425..259162 (+) | 738 | WP_150191364.1 | phosphoribosylaminoimidazolesuccinocarboxamide synthase | - |
| NBT14_RS01210 (NBT14_01210) | purS | 259164..259427 (+) | 264 | WP_140837207.1 | phosphoribosylformylglycinamidine synthase subunit PurS | - |
| NBT14_RS01215 (NBT14_01215) | purQ | 259424..260110 (+) | 687 | WP_277380184.1 | phosphoribosylformylglycinamidine synthase subunit PurQ | - |
| NBT14_RS01220 (NBT14_01220) | purL | 260103..262337 (+) | 2235 | WP_002828728.1 | phosphoribosylformylglycinamidine synthase subunit PurL | - |
| NBT14_RS01225 (NBT14_01225) | purF | 262322..263787 (+) | 1466 | Protein_221 | amidophosphoribosyltransferase | - |
| NBT14_RS01230 (NBT14_01230) | purM | 263809..264825 (+) | 1017 | WP_002828726.1 | phosphoribosylformylglycinamidine cyclo-ligase | - |
| NBT14_RS01235 (NBT14_01235) | purN | 264825..265409 (+) | 585 | WP_277362280.1 | phosphoribosylglycinamide formyltransferase | - |
| NBT14_RS01240 (NBT14_01240) | purH | 265412..266941 (+) | 1530 | WP_277380188.1 | bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase | - |
| NBT14_RS01245 (NBT14_01245) | purD | 266956..268188 (+) | 1233 | WP_277362278.1 | phosphoribosylamine--glycine ligase | - |
| NBT14_RS01260 (NBT14_01260) | - | 268954..270105 (+) | 1152 | WP_277362277.1 | IMP dehydrogenase | - |
Sequence
Protein
Download Length: 183 a.a. Molecular weight: 19776.29 Da Isoelectric Point: 4.7513
>NTDB_id=695209 NBT14_RS01180 WP_002828738.1 255132..255683(+) (ssb) [Weissella paramesenteroides strain LCW-28]
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF
MINRVVLVGRLTRDVELRYTTSGAAVGSFTIAVNRQFTNANGERDTDFINAVIWRKSAENFANFTSKGSLVGIEGRIQTR
NYENQQGQRVYVTEVVVDNFSLLESRAESEARRSQSGSNNTNNFGGGQQRSQGNFNSSSSQNPFGAPASSGNVFNGGSAN
SQSSNDPFGGGQEIDISDDDLPF
Nucleotide
Download Length: 552 bp
>NTDB_id=695209 NBT14_RS01180 WP_002828738.1 255132..255683(+) (ssb) [Weissella paramesenteroides strain LCW-28]
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGAATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGCAGCCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTTAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA
ATGATAAATCGTGTTGTTCTGGTTGGTCGTTTGACACGTGATGTTGAATTACGTTATACGACTTCTGGTGCTGCTGTTGG
TTCATTTACAATTGCCGTTAATCGACAATTTACAAATGCTAACGGTGAGCGTGATACTGATTTTATTAATGCTGTCATTT
GGCGTAAGTCAGCAGAAAATTTTGCTAATTTTACATCAAAAGGTTCGTTAGTTGGTATTGAAGGCCGAATTCAAACTCGT
AATTATGAAAATCAACAAGGGCAACGTGTTTATGTCACGGAAGTCGTCGTTGATAACTTCTCATTGTTAGAAAGTCGTGC
TGAAAGTGAAGCACGCCGTTCTCAGAGTGGTTCAAATAATACGAATAATTTTGGTGGTGGACAGCAACGCAGCCAAGGAA
ACTTTAATTCCTCATCATCACAAAACCCATTTGGTGCACCAGCATCTAGTGGTAATGTGTTTAATGGTGGTTCAGCTAAT
TCACAATCATCAAATGATCCTTTCGGTGGTGGTCAAGAGATTGATATCTCTGATGATGACCTACCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
65.761 |
100 |
0.661 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.63 |
100 |
0.519 |