Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   BVS141_RS01830 Genome accession   NZ_AP018402
Coordinates   342091..342528 (-) Length   145 a.a.
NCBI ID   WP_060563062.1    Uniprot ID   -
Organism   Bacillus velezensis strain S141     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 337091..347528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVS141_RS01805 (BVS141_03640) - 338110..339246 (+) 1137 WP_052827030.1 zinc-dependent alcohol dehydrogenase -
  BVS141_RS01810 (BVS141_03650) - 339261..339695 (+) 435 WP_007409358.1 RDD family protein -
  BVS141_RS01815 (BVS141_03660) - 339767..340090 (+) 324 WP_060563059.1 YckD family protein -
  BVS141_RS01820 (BVS141_03670) - 340195..341631 (+) 1437 WP_060563060.1 glycoside hydrolase family 1 protein -
  BVS141_RS01825 (BVS141_03680) nin/comJ 341672..342070 (-) 399 WP_060563061.1 competence protein ComJ Regulator
  BVS141_RS01830 (BVS141_03690) nucA/comI 342091..342528 (-) 438 WP_060563062.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BVS141_RS01835 (BVS141_03700) hxlB 342887..343444 (-) 558 WP_007409354.1 6-phospho-3-hexuloisomerase -
  BVS141_RS01840 (BVS141_03710) hxlA 343441..344076 (-) 636 WP_060563063.1 3-hexulose-6-phosphate synthase -
  BVS141_RS01845 (BVS141_03720) - 344308..344670 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16086.38 Da        Isoelectric Point: 8.4850

>NTDB_id=69480 BVS141_RS01830 WP_060563062.1 342091..342528(-) (nucA/comI) [Bacillus velezensis strain S141]
MKTLKALLLILIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=69480 BVS141_RS01830 WP_060563062.1 342091..342528(-) (nucA/comI) [Bacillus velezensis strain S141]
TTGAAAACATTAAAAGCACTGCTGCTTATTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment