Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NB629_RS10480 Genome accession   NZ_CP098253
Coordinates   2186212..2186607 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain M0     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2181212..2191607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB629_RS10455 (NB629_10455) - 2182155..2182559 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  NB629_RS10460 (NB629_10460) - 2183438..2183671 (+) 234 WP_000384523.1 DUF1146 family protein -
  NB629_RS10465 (NB629_10465) murA 2183782..2185047 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NB629_RS10470 (NB629_10470) fabZ 2185081..2185521 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NB629_RS10475 (NB629_10475) - 2185578..2186018 (-) 441 WP_000846746.1 YwpF-like family protein -
  NB629_RS10480 (NB629_10480) ssb 2186212..2186607 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  NB629_RS10485 (NB629_10485) sceD 2186996..2187691 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  NB629_RS10490 (NB629_10490) tenA 2188216..2188905 (+) 690 WP_000396068.1 thiaminase II -
  NB629_RS10495 (NB629_10495) thiD 2188898..2189728 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NB629_RS10500 (NB629_10500) thiM 2189712..2190503 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  NB629_RS10505 (NB629_10505) thiE 2190505..2191146 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=694764 NB629_RS10480 WP_000932696.1 2186212..2186607(+) (ssb) [Staphylococcus aureus strain M0]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=694764 NB629_RS10480 WP_000932696.1 2186212..2186607(+) (ssb) [Staphylococcus aureus strain M0]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985