Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   NB642_RS04150 Genome accession   NZ_CP098245
Coordinates   878458..879258 (-) Length   266 a.a.
NCBI ID   WP_005881549.1    Uniprot ID   C3XB40
Organism   Oxalobacter formigenes strain HOxSLD-1     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 873458..884258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB642_RS04130 (NB642_04125) tyrS 873897..875141 (+) 1245 WP_005881558.1 tyrosine--tRNA ligase -
  NB642_RS04135 (NB642_04130) - 875173..877440 (-) 2268 WP_005881556.1 RelA/SpoT family protein -
  NB642_RS04140 (NB642_04135) rpoZ 877519..877722 (-) 204 WP_005881554.1 DNA-directed RNA polymerase subunit omega -
  NB642_RS04145 (NB642_04140) gmk 877757..878410 (-) 654 WP_005881552.1 guanylate kinase -
  NB642_RS04150 (NB642_04145) comL 878458..879258 (-) 801 WP_005881549.1 outer membrane protein assembly factor BamD Machinery gene
  NB642_RS04155 (NB642_04150) - 879328..880356 (+) 1029 WP_005881547.1 RluA family pseudouridine synthase -
  NB642_RS04160 (NB642_04155) pgeF 880337..881091 (+) 755 Protein_803 peptidoglycan editing factor PgeF -
  NB642_RS04165 (NB642_04160) rimO 881215..882606 (+) 1392 WP_005881544.1 30S ribosomal protein S12 methylthiotransferase RimO -
  NB642_RS04170 (NB642_04165) - 882603..883778 (+) 1176 WP_005881542.1 cystathionine beta-lyase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 30992.49 Da        Isoelectric Point: 8.8623

>NTDB_id=694643 NB642_RS04150 WP_005881549.1 878458..879258(-) (comL) [Oxalobacter formigenes strain HOxSLD-1]
MRKYLTILLACIIALSISACGLLPEKIDETASWPAGKLYREAKEELNSGNYEKAVEYFEKLEARYPFGIYAQQAQMDIAY
AYYRQNEQAQALAAAERFIKLHPNHPNIDYMYYLKGLINFNDRLGLLNFAFRQDLSERDPKAAQDAFDAFKVLVTRYPDS
VYAKDAMLRMKYLVTMLAKYEIHVAKYYYRRGAYLAAANRAQRTIKNYPESHVVEEALYIMAQSYKKLGLYDLSADAERV
FKQNYPDSKIPYGAADKKSDPWWQFW

Nucleotide


Download         Length: 801 bp        

>NTDB_id=694643 NB642_RS04150 WP_005881549.1 878458..879258(-) (comL) [Oxalobacter formigenes strain HOxSLD-1]
ATGCGCAAGTATTTAACCATCCTTCTGGCCTGCATTATCGCCCTATCCATATCCGCTTGTGGCTTGTTGCCTGAAAAAAT
AGATGAAACGGCTTCCTGGCCTGCAGGCAAATTGTATCGCGAAGCCAAAGAAGAATTAAACTCGGGCAATTACGAAAAAG
CCGTCGAATACTTCGAAAAGCTGGAAGCACGATATCCTTTCGGCATATACGCCCAGCAGGCCCAGATGGATATTGCCTAT
GCCTACTACCGCCAGAATGAACAGGCGCAGGCTTTGGCGGCAGCTGAACGTTTCATCAAACTGCACCCGAATCATCCAAA
CATCGATTATATGTATTATCTGAAAGGCCTGATCAATTTCAACGATCGTTTGGGCCTTCTGAATTTCGCATTCCGGCAGG
ATTTGTCGGAACGTGACCCGAAAGCGGCACAGGATGCATTCGATGCGTTCAAGGTTCTGGTGACCCGTTATCCGGACAGC
GTCTATGCCAAAGATGCCATGCTCCGCATGAAATATCTGGTTACCATGCTCGCCAAGTATGAAATTCACGTTGCCAAATA
TTATTACCGGCGTGGTGCCTATCTGGCAGCGGCAAACCGTGCACAACGCACGATCAAGAATTACCCGGAATCCCATGTCG
TCGAAGAAGCGCTCTACATCATGGCACAGTCATACAAAAAACTGGGGTTGTATGACCTGAGTGCTGACGCGGAACGCGTC
TTCAAACAGAACTATCCCGACAGCAAGATCCCTTATGGCGCTGCGGATAAAAAATCCGATCCCTGGTGGCAATTCTGGTA
A

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(35-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C3XB40

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

48.12

100

0.481
  comL Neisseria gonorrhoeae MS11

47.529

98.872

0.47