Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PCK13_RS12940 Genome accession   NZ_CP115178
Coordinates   2647902..2648639 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2642902..2653639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCK13_RS12925 (PCK13_12915) clpC 2643356..2645929 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PCK13_RS12930 (PCK13_12920) yfiH 2646059..2646790 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  PCK13_RS12935 (PCK13_12925) rluD 2646787..2647767 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PCK13_RS12940 (PCK13_12930) comL 2647902..2648639 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PCK13_RS12945 (PCK13_12935) raiA 2648910..2649251 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PCK13_RS12950 (PCK13_12940) pheL 2649355..2649402 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PCK13_RS12955 (PCK13_12945) pheA 2649500..2650660 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  PCK13_RS12960 (PCK13_12950) tyrA 2650703..2651824 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PCK13_RS12965 (PCK13_12955) aroF 2651835..2652905 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PCK13_RS12970 (PCK13_12960) yfiL 2653115..2653480 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=694235 PCK13_RS12940 WP_000197686.1 2647902..2648639(+) (comL) [Escherichia coli strain B]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=694235 PCK13_RS12940 WP_000197686.1 2647902..2648639(+) (comL) [Escherichia coli strain B]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376