Detailed information NTG0694158

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBY29_RS04285
• Genome accession: NZ_CP098175
• Coordinates: 915150..915950 (-)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z0117KP0001
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 910150..920950

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY29_RS04265 (NBY29_04265)	dksA	910730..911185 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
NBY29_RS04270 (NBY29_04270)	sfsA	911348..912064 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NBY29_RS04275 (NBY29_04275)	thpR	912064..912600 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NBY29_RS04280 (NBY29_04280)	hrpB	912673..915102 (+)	2430	WP_023302300.1	ATP-dependent helicase HrpB	-
NBY29_RS04285 (NBY29_04285)	pilD	915150..915950 (-)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NBY29_RS04290 (NBY29_04290)	-	915947..916693 (-)	747	WP_004145897.1	type II secretion system protein N	-
NBY29_RS04295 (NBY29_04295)	-	916683..917168 (-)	486	WP_085808046.1	type II secretion system protein M	-
NBY29_RS04300 (NBY29_04300)	gspL	917161..918354 (-)	1194	WP_029498035.1	type II secretion system protein GspL	-
NBY29_RS04305 (NBY29_04305)	gspK	918341..919327 (-)	987	WP_004177385.1	type II secretion system minor pseudopilin GspK	-
NBY29_RS04310 (NBY29_04310)	gspJ	919324..919920 (-)	597	WP_023302298.1	type II secretion system minor pseudopilin GspJ	-
NBY29_RS04315 (NBY29_04315)	gspI	919917..920282 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NBY29_RS04320 (NBY29_04320)	gspH	920279..920794 (-)	516	WP_004191951.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=694158 NBY29_RS04285 WP_004145898.1 915150..915950(-) (pilD) [Klebsiella pneumoniae strain Z0117KP0001]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=694158 NBY29_RS04285 WP_004145898.1 915150..915950(-) (pilD) [Klebsiella pneumoniae strain Z0117KP0001]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425