Detailed information NTG0694135

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBY30_RS04310
• Genome accession: NZ_CP098169
• Coordinates: 903326..904126 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain Z0117KP0003
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 898326..909126

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY30_RS04275 (NBY30_04275)	gspH	898482..898997 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
NBY30_RS04280 (NBY30_04280)	gspI	898994..899359 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NBY30_RS04285 (NBY30_04285)	gspJ	899356..899952 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
NBY30_RS04290 (NBY30_04290)	gspK	899949..900935 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
NBY30_RS04295 (NBY30_04295)	gspL	900922..902115 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
NBY30_RS04300 (NBY30_04300)	-	902108..902593 (+)	486	WP_004145896.1	type II secretion system protein M	-
NBY30_RS04305 (NBY30_04305)	-	902583..903329 (+)	747	WP_004145897.1	type II secretion system protein N	-
NBY30_RS04310 (NBY30_04310)	pilD	903326..904126 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
NBY30_RS04315 (NBY30_04315)	hrpB	904174..906603 (-)	2430	WP_032433845.1	ATP-dependent helicase HrpB	-
NBY30_RS04320 (NBY30_04320)	thpR	906676..907212 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
NBY30_RS04325 (NBY30_04325)	sfsA	907212..907928 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NBY30_RS04330 (NBY30_04330)	dksA	908091..908546 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=694135 NBY30_RS04310 WP_004191960.1 903326..904126(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0003]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=694135 NBY30_RS04310 WP_004191960.1 903326..904126(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0003]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421