Detailed information NTG0694089

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBY34_RS04500
• Genome accession: NZ_CP098165
• Coordinates: 962939..963739 (-)
• Length: 266 a.a.
• NCBI ID: WP_126033904.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z0117KP0005
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 957939..968739

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY34_RS04480 (NBY34_04480)	dksA	958519..958974 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
NBY34_RS04485 (NBY34_04485)	sfsA	959137..959853 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NBY34_RS04490 (NBY34_04490)	thpR	959853..960389 (-)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NBY34_RS04495 (NBY34_04495)	hrpB	960462..962891 (+)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
NBY34_RS04500 (NBY34_04500)	pilD	962939..963739 (-)	801	WP_126033904.1	A24 family peptidase	Machinery gene
NBY34_RS04505 (NBY34_04505)	-	963736..964482 (-)	747	WP_032434210.1	type II secretion system protein N	-
NBY34_RS04510 (NBY34_04510)	-	964472..964957 (-)	486	WP_004145896.1	type II secretion system protein M	-
NBY34_RS04515 (NBY34_04515)	gspL	964950..966143 (-)	1194	WP_032434208.1	type II secretion system protein GspL	-
NBY34_RS04520 (NBY34_04520)	gspK	966130..967116 (-)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
NBY34_RS04525 (NBY34_04525)	gspJ	967113..967709 (-)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
NBY34_RS04530 (NBY34_04530)	gspI	967706..968071 (-)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NBY34_RS04535 (NBY34_04535)	gspH	968068..968583 (-)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.06 Da
• Isoelectric Point: 8.8894

>NTDB_id=694089 NBY34_RS04500 WP_126033904.1 962939..963739(-) (pilD) [Klebsiella pneumoniae strain Z0117KP0005]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILVRIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=694089 NBY34_RS04500 WP_126033904.1 962939..963739(-) (pilD) [Klebsiella pneumoniae strain Z0117KP0005]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGTGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425