Detailed information NTG0694056

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBY40_RS21325
• Genome accession: NZ_CP098159
• Coordinates: 4392273..4393073 (+)
• Length: 266 a.a.
• NCBI ID: WP_126033904.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain Z0117KP0008
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4387273..4398073

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY40_RS21290 (NBY40_21290)	gspH	4387429..4387944 (+)	516	WP_032414529.1	type II secretion system minor pseudopilin GspH	-
NBY40_RS21295 (NBY40_21295)	gspI	4387941..4388306 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NBY40_RS21300 (NBY40_21300)	gspJ	4388303..4388899 (+)	597	WP_032411156.1	type II secretion system minor pseudopilin GspJ	-
NBY40_RS21305 (NBY40_21305)	gspK	4388896..4389882 (+)	987	WP_077254116.1	type II secretion system minor pseudopilin GspK	-
NBY40_RS21310 (NBY40_21310)	gspL	4389869..4391062 (+)	1194	WP_032434208.1	type II secretion system protein GspL	-
NBY40_RS21315 (NBY40_21315)	-	4391055..4391540 (+)	486	WP_004145896.1	type II secretion system protein M	-
NBY40_RS21320 (NBY40_21320)	-	4391530..4392276 (+)	747	WP_032434210.1	type II secretion system protein N	-
NBY40_RS21325 (NBY40_21325)	pilD	4392273..4393073 (+)	801	WP_126033904.1	A24 family peptidase	Machinery gene
NBY40_RS21330 (NBY40_21330)	hrpB	4393121..4395550 (-)	2430	WP_032434212.1	ATP-dependent helicase HrpB	-
NBY40_RS21335 (NBY40_21335)	thpR	4395623..4396159 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NBY40_RS21340 (NBY40_21340)	sfsA	4396159..4396875 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NBY40_RS21345 (NBY40_21345)	dksA	4397038..4397493 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29433.06 Da
• Isoelectric Point: 8.8894

>NTDB_id=694056 NBY40_RS21325 WP_126033904.1 4392273..4393073(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0008]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILVRIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=694056 NBY40_RS21325 WP_126033904.1 4392273..4393073(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0008]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGTGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	45.818	100	0.474
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425