Detailed information NTG0693900

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NBY52_RS12395
• Genome accession: NZ_CP098136
• Coordinates: 2219195..2219995 (+)
• Length: 266 a.a.
• NCBI ID: WP_004191960.1
• Uniprot ID: A0AAJ5B1F9
• Organism: Klebsiella pneumoniae strain Z0117KP0027
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2214195..2224995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NBY52_RS12360 (NBY52_12365)	gspH	2214351..2214866 (+)	516	WP_032422016.1	type II secretion system minor pseudopilin GspH	-
NBY52_RS12365 (NBY52_12370)	gspI	2214863..2215228 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NBY52_RS12370 (NBY52_12375)	gspJ	2215225..2215821 (+)	597	WP_032433846.1	type II secretion system minor pseudopilin GspJ	-
NBY52_RS12375 (NBY52_12380)	gspK	2215818..2216804 (+)	987	WP_077255453.1	type II secretion system minor pseudopilin GspK	-
NBY52_RS12380 (NBY52_12385)	gspL	2216791..2217984 (+)	1194	WP_032416685.1	type II secretion system protein GspL	-
NBY52_RS12385 (NBY52_12390)	-	2217977..2218462 (+)	486	WP_004145896.1	type II secretion system protein M	-
NBY52_RS12390 (NBY52_12395)	-	2218452..2219198 (+)	747	WP_004145897.1	type II secretion system protein N	-
NBY52_RS12395 (NBY52_12400)	pilD	2219195..2219995 (+)	801	WP_004191960.1	A24 family peptidase	Machinery gene
NBY52_RS12400 (NBY52_12405)	hrpB	2220043..2222472 (-)	2430	WP_032433845.1	ATP-dependent helicase HrpB	-
NBY52_RS12405 (NBY52_12410)	thpR	2222545..2223081 (+)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
NBY52_RS12410 (NBY52_12415)	sfsA	2223081..2223797 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NBY52_RS12415 (NBY52_12420)	dksA	2223960..2224415 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29403.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=693900 NBY52_RS12395 WP_004191960.1 2219195..2219995(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0027]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMI

Nucleotide

• Length: 801 bp

>NTDB_id=693900 NBY52_RS12395 WP_004191960.1 2219195..2219995(+) (pilD) [Klebsiella pneumoniae strain Z0117KP0027]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGATCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTACTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGATCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.057	99.624	0.489
pilD	Vibrio campbellii strain DS40M4	46.545	100	0.481
pilD	Acinetobacter nosocomialis M2	46.388	98.872	0.459
pilD	Acinetobacter baumannii D1279779	45.627	98.872	0.451
pilD	Neisseria gonorrhoeae MS11	43.922	95.865	0.421