Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   NBE99_RS08640 Genome accession   NZ_CP098039
Coordinates   1788182..1789879 (+) Length   565 a.a.
NCBI ID   WP_250681690.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HN-54     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1783182..1794879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBE99_RS08615 (NBE99_08615) - 1783512..1784213 (-) 702 WP_250681685.1 PilN domain-containing protein -
  NBE99_RS08620 (NBE99_08620) pilM 1784225..1785316 (-) 1092 WP_250681686.1 type IV pilus biogenesis protein PilM Machinery gene
  NBE99_RS08625 (NBE99_08625) - 1785590..1786144 (-) 555 WP_250681687.1 L,D-transpeptidase -
  NBE99_RS08630 (NBE99_08630) - 1786166..1786510 (-) 345 WP_250681688.1 hypothetical protein -
  NBE99_RS08635 (NBE99_08635) - 1786824..1788053 (-) 1230 WP_250681689.1 acetate/propionate family kinase -
  NBE99_RS08640 (NBE99_08640) comA 1788182..1789879 (+) 1698 WP_250681690.1 phospholipase D-like domain-containing protein Machinery gene
  NBE99_RS08645 (NBE99_08645) - 1789891..1790403 (-) 513 WP_250681691.1 adenine phosphoribosyltransferase -
  NBE99_RS08650 (NBE99_08650) - 1790453..1791736 (-) 1284 WP_250681692.1 NCS2 family permease -
  NBE99_RS08655 (NBE99_08655) - 1792184..1793899 (+) 1716 WP_250681693.1 pilus assembly PilX N-terminal domain-containing protein -
  NBE99_RS08660 (NBE99_08660) - 1793918..1794709 (+) 792 WP_250681694.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63030.55 Da        Isoelectric Point: 8.7683

>NTDB_id=693806 NBE99_RS08640 WP_250681690.1 1788182..1789879(+) (comA) [Thermosynechococcus sp. HN-54]
MPWQQRKWRRQGVYLLLFLLGLLIAAVVLTQLRSHPILRPSLNPLPQHPYIAVHMNHSQAHSYQEPYRPYTREGEDLEAI
MIEQIAKAQKTIDVAVQEFRLPNLAKALAARQQAGVRVRVIMENTYTAPWATYSAAQVSAMDPRMRERYNDWKALVDTNG
DGQLSAAELSDRDVQTILNEAKIPWIDDTADGSKGSMLMHHKFIVIDNRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDNPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPLRPPQRVAVGDAMVTVRFSPTPRSQPWSASTNGLIGQTLTRGRQ
KIDMALFVLSDQELSYVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGKCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYEREFERLYSNSRLGLPQHIRDRIQEQL
TACGGNIATRPATSSGSRPSSPTTRVNLNTATAAELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=693806 NBE99_RS08640 WP_250681690.1 1788182..1789879(+) (comA) [Thermosynechococcus sp. HN-54]
GTGCCTTGGCAACAGCGGAAATGGCGACGACAGGGAGTGTATCTGCTGTTATTTCTACTGGGGTTGTTAATTGCAGCAGT
GGTGCTCACGCAATTGCGATCGCACCCCATTCTCCGCCCCTCCCTGAATCCCCTCCCCCAACATCCTTACATTGCTGTCC
ACATGAACCACTCCCAAGCCCACAGCTATCAAGAACCCTACCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGAGCAGATTGCCAAGGCGCAAAAGACCATTGATGTGGCGGTGCAGGAGTTTCGTTTACCGAATCTGGCAAAAGC
TCTAGCAGCACGGCAGCAGGCAGGGGTACGGGTAAGAGTGATAATGGAAAATACCTACACTGCCCCTTGGGCAACGTACA
GTGCTGCTCAAGTGAGCGCCATGGATCCAAGAATGCGGGAGCGCTATAACGATTGGAAAGCCCTAGTGGATACCAATGGC
GATGGTCAACTTAGTGCCGCCGAACTCAGCGATCGCGATGTGCAGACAATCCTCAACGAAGCCAAAATTCCTTGGATTGA
CGACACGGCGGATGGCTCCAAGGGCAGCATGCTCATGCACCACAAGTTTATTGTCATTGACAATCGCCAAGTGATTGCGA
CCACGGCGAACTTTACCCTCAGTGATGTGCATGGCGACTTGGGACGACCCGATACCCGTGGCAATGCCAACTCCCTCTTG
GTGATTGATAACCCCGCCGTAGCGCGCCTATTTACCGAGGAATTTAACATTATGTGGGGGGATGGTCCCGGTGGTCAGCC
TAACAGTCGCTTTGGGGTCAAAAAGCCGCTGCGTCCTCCTCAACGGGTTGCCGTGGGCGATGCCATGGTCACGGTGCGCT
TTTCGCCGACCCCGCGATCCCAACCTTGGTCCGCCTCCACCAATGGCTTGATTGGCCAAACACTGACTCGGGGGCGTCAA
AAAATTGATATGGCACTTTTTGTCTTGTCAGATCAGGAACTGTCCTACGTTTTAGAGGAACGCCACAACCAAGGGGTCAG
CATTCGCGCCCTCATTGACTCAGGATTTATCTACCGAGACTTTAGCGAAGCCTTGGACATGATGGGCGTAGCAATGGCCA
ATACTGCCCAAGCCCGACAGGGAAAGTGCTACTACGAAGCTGGCAACCGCCCGTGGCAAAACCCCATTCAAACGGTGGGT
ACCCCCCTACTGCCGGAGGGGGATAAGCTGCACCATAAGTATGGCGTGGTGGATGATCGCACCGTCATTGTCGGTTCCCA
CAACTGGTCAGAGGCAGCCAACCGCGGCAATGATGAATTCTTGCTGGTCATTGAGCATCCCACTGTAGCGGCTCACTACG
AACGGGAGTTTGAGCGGCTCTATAGCAATAGTCGTCTGGGTTTGCCGCAGCATATTCGCGATCGCATTCAGGAACAACTG
ACCGCCTGTGGCGGCAACATTGCCACTCGACCGGCAACCTCCTCCGGAAGTCGTCCCAGCAGCCCCACCACACGGGTGAA
CTTGAACACAGCCACTGCTGCTGAACTGCAAACTCTACCGGGTGTCGGCCCCAAACTGGCAGCAGAAATTATCCGTGCTC
GCGAGCAAAAGCCGTTTCAATCGTTGGCGGATTTAGATGCCGTCCCCGGTGTTGGGCCGAAGCTCCTCGAACGATTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(81-259)

Helix-hairpin-helix motif (HHH_3)

(504-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.057

100

0.481