Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NBE99_RS02855 Genome accession   NZ_CP098039
Coordinates   589382..589756 (-) Length   124 a.a.
NCBI ID   WP_250683001.1    Uniprot ID   -
Organism   Thermosynechococcus sp. HN-54     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 584382..594756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBE99_RS02840 (NBE99_02835) - 584683..587292 (-) 2610 WP_250682998.1 hybrid sensor histidine kinase/response regulator -
  NBE99_RS02845 (NBE99_02840) - 587306..588868 (-) 1563 WP_250682999.1 methyl-accepting chemotaxis protein -
  NBE99_RS02850 (NBE99_02845) - 588865..589353 (-) 489 WP_250683000.1 chemotaxis protein CheW -
  NBE99_RS02855 (NBE99_02850) pilH 589382..589756 (-) 375 WP_250683001.1 response regulator transcription factor Machinery gene
  NBE99_RS02860 (NBE99_02855) - 589753..590898 (-) 1146 WP_250683002.1 response regulator -
  NBE99_RS02865 (NBE99_02860) - 591460..592398 (+) 939 WP_250683003.1 bile acid:sodium symporter family protein -
  NBE99_RS02870 (NBE99_02865) - 592446..593777 (+) 1332 WP_250683004.1 MotA/TolQ/ExbB proton channel family protein -
  NBE99_RS02875 (NBE99_02870) urtE 593774..594478 (-) 705 WP_315897305.1 urea ABC transporter ATP-binding subunit UrtE -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 14073.24 Da        Isoelectric Point: 4.4985

>NTDB_id=693797 NBE99_RS02855 WP_250683001.1 589382..589756(-) (pilH) [Thermosynechococcus sp. HN-54]
MKQVLVVEDSRTEQTMIVSILEKLGHQTHVAETAEKAMEWLASHQPPDLIVLDIVMPGVNGLELCREVRANPLLKTVPII
FCSSKDQDFDRFWALRQGGNAYITKPFEPEELIETINEYLPPLS

Nucleotide


Download         Length: 375 bp        

>NTDB_id=693797 NBE99_RS02855 WP_250683001.1 589382..589756(-) (pilH) [Thermosynechococcus sp. HN-54]
ATGAAGCAGGTGCTAGTCGTTGAGGATTCCCGCACAGAGCAAACCATGATTGTCTCAATTTTAGAGAAATTGGGACACCA
AACCCACGTGGCGGAAACAGCAGAAAAAGCAATGGAATGGTTGGCCAGTCATCAGCCCCCCGATTTGATTGTGCTTGATA
TTGTGATGCCCGGCGTCAATGGTTTGGAACTGTGTCGGGAAGTGCGGGCAAACCCCCTCCTCAAGACAGTACCGATTATC
TTTTGCTCTTCTAAGGATCAGGACTTTGATCGATTCTGGGCATTGCGTCAGGGGGGCAATGCCTACATTACCAAGCCCTT
TGAACCCGAAGAGTTGATTGAAACCATCAACGAATACCTACCGCCGCTGTCTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50.833

96.774

0.492
  vicR Streptococcus mutans UA159

37.5

96.774

0.363