Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   O6X69_RS10280 Genome accession   NZ_CP114894
Coordinates   2088563..2089300 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CM19     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2083563..2094300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  O6X69_RS10265 clpC 2084017..2086590 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  O6X69_RS10270 yfiH 2086720..2087451 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  O6X69_RS10275 rluD 2087448..2088428 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  O6X69_RS10280 comL 2088563..2089300 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  O6X69_RS10285 raiA 2089571..2089912 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  O6X69_RS10290 pheL 2090016..2090063 (+) 48 WP_010723158.1 phe operon leader peptide -
  O6X69_RS10295 pheA 2090162..2091322 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  O6X69_RS10300 tyrA 2091365..2092486 (-) 1122 WP_000225229.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  O6X69_RS10305 aroF 2092497..2093567 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  O6X69_RS10310 yfiL 2093777..2094142 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=693752 O6X69_RS10280 WP_000197686.1 2088563..2089300(+) (comL) [Escherichia coli strain CM19]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=693752 O6X69_RS10280 WP_000197686.1 2088563..2089300(+) (comL) [Escherichia coli strain CM19]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376