Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NAL94_RS10820 Genome accession   NZ_CP098034
Coordinates   597017..597631 (-) Length   204 a.a.
NCBI ID   WP_005379994.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 592017..602631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS10810 (NAL94_10810) aceF 593285..595177 (+) 1893 WP_005396678.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  NAL94_RS10815 (NAL94_10815) lpdA 595445..596872 (+) 1428 WP_005379993.1 dihydrolipoyl dehydrogenase -
  NAL94_RS10820 (NAL94_10820) opaR 597017..597631 (-) 615 WP_005379994.1 transcriptional regulator OpaR Regulator
  NAL94_RS10825 (NAL94_10825) hpt 597951..598481 (+) 531 WP_005379995.1 hypoxanthine phosphoribosyltransferase -
  NAL94_RS10830 (NAL94_10830) can 598560..599228 (-) 669 WP_005379996.1 carbonate dehydratase -
  NAL94_RS10835 (NAL94_10835) - 599510..601180 (+) 1671 WP_005379997.1 SulP family inorganic anion transporter -
  NAL94_RS10840 (NAL94_10840) - 601431..602348 (+) 918 WP_005380000.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23609.89 Da        Isoelectric Point: 6.4042

>NTDB_id=693691 NAL94_RS10820 WP_005379994.1 597017..597631(-) (opaR) [Vibrio alginolyticus strain E110]
MDSIAKRPRTRLSPIKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDLHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRAKGEAELKHLVNSYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=693691 NAL94_RS10820 WP_005379994.1 597017..597631(-) (opaR) [Vibrio alginolyticus strain E110]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCAATTAAGCGTAAGCAACAGTTAATGGAAATCGCATTGGA
AGTATTTGCGCGCCGCGGCATCGGTCGTGGTGGTCACGCAGATATCGCAGAAATTGCTCAAGTTTCTGTGGCGACTGTTT
TTAACTACTTCCCTACACGCGAAGACTTGGTGGATGAAGTTCTCAATCACGTCGTACGTCAGTTCTCAAATTTCCTATCG
GATAACATAGACCTAGACTTACATGCACGTGAAAACATCGCCAATATTACTAATGCGATGATCGAGCTTGTCAGCCAAGA
CTGTCACTGGCTAAAAGTATGGTTCGAGTGGAGTGCTTCAACACGTGACGAAGTATGGCCATTGTTTGTTTCAACTAACC
GTACTAACCAGTTGCTGGTACAAAACATGTTCATTAAAGCAATTGAACGTGGCGAAGTCTGTGATCAGCACGATTCAGAA
CACTTGGCAAACCTGTTCCACGGTATTTGTTACTCACTGTTTGTCCAAGCGAACCGCGCTAAAGGTGAAGCGGAGCTGAA
ACACCTAGTGAATTCATACTTAGATATGCTTTGCATTTACAACCGTGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

97.059

100

0.971
  hapR Vibrio cholerae C6706

73.232

97.059

0.711
  hapR Vibrio cholerae strain A1552

73.232

97.059

0.711