Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   EL355_RS00065 Genome accession   NZ_AP018392
Coordinates   11695..12291 (+) Length   198 a.a.
NCBI ID   WP_003568462.1    Uniprot ID   A0A0C9PXZ6
Organism   Lacticaseibacillus paracasei strain IJH-SONE68     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6695..17291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EL355_RS00045 (SONE68_0007) gyrA 7196..9817 (+) 2622 WP_003584054.1 DNA gyrase subunit A -
  EL355_RS00050 (SONE68_0008) deoC 9922..10626 (-) 705 WP_003568456.1 deoxyribose-phosphate aldolase -
  EL355_RS00055 (SONE68_0009) ssb 10809..11240 (+) 432 WP_003568458.1 single-stranded DNA-binding protein -
  EL355_RS00060 (SONE68_0010) rpsF 11368..11664 (+) 297 WP_003568460.1 30S ribosomal protein S6 -
  EL355_RS00065 (SONE68_0011) ssb 11695..12291 (+) 597 WP_003568462.1 single-stranded DNA-binding protein Machinery gene
  EL355_RS00070 (SONE68_0012) rpsR 12378..12614 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  EL355_RS00075 (SONE68_0013) - 13056..14534 (+) 1479 WP_126352858.1 cytochrome ubiquinol oxidase subunit I -
  EL355_RS00080 (SONE68_0014) cydB 14527..15546 (+) 1020 WP_003584062.1 cytochrome d ubiquinol oxidase subunit II -
  EL355_RS00085 (SONE68_0015) - 15573..15767 (+) 195 WP_126353667.1 hypothetical protein -
  EL355_RS00090 (SONE68_0016) - 15840..16034 (-) 195 Protein_14 hypothetical protein -
  EL355_RS00095 (SONE68_0017) - 16169..16369 (-) 201 WP_103220192.1 hypothetical protein -
  EL355_RS00100 (SONE68_0018) istB 16366..17121 (-) 756 WP_103220191.1 IS21-like element helper ATPase IstB -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21138.87 Da        Isoelectric Point: 4.9056

>NTDB_id=69368 EL355_RS00065 WP_003568462.1 11695..12291(+) (ssb) [Lacticaseibacillus paracasei strain IJH-SONE68]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 597 bp        

>NTDB_id=69368 EL355_RS00065 WP_003568462.1 11695..12291(+) (ssb) [Lacticaseibacillus paracasei strain IJH-SONE68]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGACGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTTACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCCATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C9PXZ6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.296

100

0.596
  ssbA Bacillus subtilis subsp. subtilis str. 168

48.485

100

0.485

Multiple sequence alignment