Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   NAF16_RS09915 Genome accession   NZ_CP098021
Coordinates   2093668..2095029 (-) Length   453 a.a.
NCBI ID   WP_155761288.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088668..2100029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS09880 (NAF16_09860) moaE 2089372..2089827 (-) 456 WP_020327922.1 molybdopterin synthase catalytic subunit MoaE -
  NAF16_RS09885 (NAF16_09865) moaD 2089829..2090074 (-) 246 WP_020327923.1 molybdopterin synthase sulfur carrier subunit -
  NAF16_RS09890 (NAF16_09870) moaC 2090071..2090550 (-) 480 WP_020327924.1 cyclic pyranopterin monophosphate synthase MoaC -
  NAF16_RS09895 (NAF16_09875) moaB 2090560..2091072 (-) 513 WP_020327925.1 molybdenum cofactor biosynthesis protein B -
  NAF16_RS09900 (NAF16_09880) moaA 2091144..2092133 (-) 990 WP_323694716.1 GTP 3',8-cyclase MoaA -
  NAF16_RS09905 (NAF16_09885) - 2092444..2093334 (+) 891 WP_154184636.1 YvcK family protein -
  NAF16_RS09910 (NAF16_09890) luxU 2093323..2093661 (-) 339 WP_020327928.1 quorum-sensing phosphorelay protein LuxU -
  NAF16_RS09915 (NAF16_09895) luxO 2093668..2095029 (-) 1362 WP_155761288.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  NAF16_RS09920 (NAF16_09900) uvrB 2095316..2097346 (-) 2031 WP_020431742.1 excinuclease ABC subunit UvrB -
  NAF16_RS09930 (NAF16_09910) - 2098189..2098842 (+) 654 WP_038127048.1 integrase arm-type DNA-binding domain-containing protein -
  NAF16_RS09935 (NAF16_09915) - 2098757..2099518 (-) 762 WP_152490437.1 HAMP domain-containing protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50361.63 Da        Isoelectric Point: 5.5538

>NTDB_id=693554 NAF16_RS09915 WP_155761288.1 2093668..2095029(-) (luxO) [Vibrio fluvialis strain V13]
MVEDTASVAALYRSYLTPLEIDINIVGTGREAIESIAHREPDLILLDLRLPDMTGMDVLHAVKQRSPDVPVIFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNEADNPGNQNYQGFIGSSQTMLAVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASRRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLG
YMSKEEGKGFVRLAPEVVERFKQYEWPGNVRQLQNVLRNVVVLNEGREITLNMLPPPLNKPSESIISVPKASVEPVSVHE
IFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQTWNEKVQEKEK

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=693554 NAF16_RS09915 WP_155761288.1 2093668..2095029(-) (luxO) [Vibrio fluvialis strain V13]
ATGGTCGAAGATACGGCGTCAGTGGCGGCGTTATATCGCTCGTACCTGACTCCGCTAGAGATCGATATCAACATCGTCGG
AACCGGGCGTGAAGCGATCGAAAGTATCGCGCACCGCGAACCGGATCTCATCCTACTCGATCTGCGCCTGCCGGACATGA
CCGGTATGGACGTATTACACGCTGTTAAACAGCGCTCGCCGGATGTACCTGTGATTTTTATGACCGCACATGGTTCAATT
GATACTGCGGTTGAGGCGATGCGTCATGGCGCACAGGATTTCCTCATCAAACCGTGTGAAGCCGACCGCTTACGTGTCAC
GGTAAACAATGCGATTCGTAAAGCCAGCAAGCTGAAGAATGAAGCTGACAACCCAGGTAACCAGAATTACCAAGGCTTTA
TCGGCAGTAGTCAAACCATGCTTGCGGTGTACCGCACCATTGACTCCGCGGCCAGCAGTAAGGCAAGCATCTTCATTACT
GGAGAAAGCGGTACGGGTAAAGAGGTGTGCGCGGAAGCGATTCACGCCGCCAGTCGACGCGGCGACAAACCGTTCATTGC
GATTAACTGTGCCGCGATTCCTAAAGATCTGATTGAAAGTGAATTGTTTGGTCATGTTAAAGGCGCATTTACTGGCGCAG
CAACGGATCGCCAGGGCGCTGCAGAATTGGCCGACGGCGGCACTCTGTTCCTCGATGAGCTGTGCGAAATGGATCTCGAT
CTGCAGACTAAATTGTTGCGCTTTATTCAGACCGGCACCTTCCAGAAAGTCGGCTCGTCAAAAATGAAAAGTGTGGATGT
GCGTTTTGTCTGCGCGACCAACCGTGACCCATGGAAAGAAGTGCAGGAAGGCCGTTTCCGTGAAGATTTGTACTACCGTC
TGTACGTCATTCCACTGCATCTGCCGCCTTTACGTGAGCGTGGCGATGATGTCATTGAAATTGCCTATTCGCTGCTGGGC
TATATGTCGAAAGAAGAGGGCAAAGGATTTGTCCGTCTCGCTCCGGAAGTCGTAGAACGTTTTAAACAATACGAATGGCC
AGGTAATGTGCGTCAGCTGCAGAACGTACTGCGCAACGTTGTGGTGCTGAATGAAGGGCGTGAAATCACCCTGAATATGC
TGCCACCACCGCTCAATAAGCCAAGCGAAAGCATCATCAGTGTACCGAAGGCTAGTGTCGAGCCCGTATCGGTTCACGAA
ATCTTCCCGCTGTGGATGACGGAAAAGCAAGCCATTGAGAAAGCGATTGAAGCCTGCGATGGCAATATTCCGCGTGCTGC
CGGTTATCTGGACGTCAGCCCATCCACTATTTATCGCAAACTGCAAACCTGGAACGAGAAGGTGCAGGAAAAGGAAAAGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-442)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

91.256

98.455

0.898
  pilR Pseudomonas aeruginosa PAK

39.732

98.896

0.393