Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   NAF16_RS01780 Genome accession   NZ_CP098021
Coordinates   374743..375360 (-) Length   205 a.a.
NCBI ID   WP_024374317.1    Uniprot ID   M1KD28
Organism   Vibrio fluvialis strain V13     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 369743..380360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS01770 (NAF16_01770) aceF 371040..372935 (+) 1896 WP_222750922.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  NAF16_RS01775 (NAF16_01775) lpdA 373194..374621 (+) 1428 WP_020331989.1 dihydrolipoyl dehydrogenase -
  NAF16_RS01780 (NAF16_01780) opaR 374743..375360 (-) 618 WP_024374317.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  NAF16_RS01785 (NAF16_01785) hpt 375681..376208 (+) 528 WP_020331991.1 hypoxanthine phosphoribosyltransferase -
  NAF16_RS01790 (NAF16_01790) can 376258..376926 (-) 669 WP_020331992.1 carbonate dehydratase -
  NAF16_RS01795 (NAF16_01795) - 377270..378187 (+) 918 WP_238777020.1 ABC transporter ATP-binding protein -
  NAF16_RS01800 (NAF16_01800) - 378192..378962 (+) 771 WP_020331995.1 ABC transporter permease -
  NAF16_RS01805 (NAF16_01805) panC 379021..379902 (-) 882 WP_020331996.1 pantoate--beta-alanine ligase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23890.30 Da        Isoelectric Point: 6.2346

>NTDB_id=693543 NAF16_RS01780 WP_024374317.1 374743..375360(-) (opaR) [Vibrio fluvialis strain V13]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLTYVVRQFSNFL
TDNIDLDIHAKENLTNITDEMVKLANEDCHWLKVWFEWSASTRDEVWPLFVSSNRTNQLLVKNMFSKAIERGEVCEQHDP
EDLATLFHGVCYSLFVQANRVRDEGYMRKLVKSYLDMLCIYKRDH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=693543 NAF16_RS01780 WP_024374317.1 374743..375360(-) (opaR) [Vibrio fluvialis strain V13]
ATGGACGCATCTATAGAGAAACGCCCTAGAACGCGGCTATCTCCTCAAAAACGTAAACTCCAGTTGATGGAAATCGCGCT
GGAAGTGTTTGCAAAACGAGGCATTGGCCGTGGTGGTCATGCGGATATCGCAGAAATTGCTCAAGTTTCTGTCGCCACCG
TGTTCAACTACTTCCCTACTCGTGAAGATTTGGTCGACGACGTACTGACTTACGTGGTTCGCCAGTTTTCCAACTTTCTC
ACCGACAACATCGATCTCGATATTCACGCGAAAGAGAACCTCACCAACATCACCGATGAAATGGTTAAGCTGGCCAATGA
AGATTGCCACTGGCTGAAAGTGTGGTTTGAATGGAGCGCCTCGACGCGTGACGAAGTATGGCCACTGTTTGTATCCAGTA
ACCGTACCAACCAGTTGCTGGTGAAGAACATGTTCTCGAAAGCCATCGAGCGCGGTGAAGTGTGTGAACAGCACGACCCT
GAAGATCTGGCGACGCTGTTCCACGGTGTCTGCTACTCACTGTTTGTGCAAGCCAACCGCGTTCGCGATGAAGGCTACAT
GCGTAAACTGGTGAAAAGCTACCTGGACATGCTGTGCATCTATAAACGCGATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB M1KD28

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

81.188

98.537

0.8
  hapR Vibrio cholerae C6706

78.713

98.537

0.776
  hapR Vibrio cholerae strain A1552

78.713

98.537

0.776