Detailed information NTG0693457

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M9782_RS16875
• Genome accession: NZ_CP097896
• Coordinates: 3851922..3852767 (-)
• Length: 281 a.a.
• NCBI ID: WP_275070913.1
• Uniprot ID: -
• Organism: Pectobacterium actinidiae strain GX-Pa1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3846922..3857767

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9782_RS16850 (M9782_16850)	-	3847136..3847906 (-)	771	WP_275070911.1	ABC transporter ATP-binding protein	-
M9782_RS16855 (M9782_16855)	-	3847908..3848927 (-)	1020	WP_080756542.1	FecCD family ABC transporter permease	-
M9782_RS16860 (M9782_16860)	-	3848924..3849988 (-)	1065	WP_275070912.1	ABC transporter substrate-binding protein	-
M9782_RS16865 (M9782_16865)	-	3850324..3851349 (+)	1026	WP_039360391.1	LLM class flavin-dependent oxidoreductase	-
M9782_RS16870 (M9782_16870)	ypdK	3851707..3851781 (+)	75	WP_099606229.1	membrane protein YpdK	-
M9782_RS16875 (M9782_16875)	pilD	3851922..3852767 (-)	846	WP_275070913.1	prepilin peptidase	Machinery gene
M9782_RS16880 (M9782_16880)	-	3852857..3853603 (-)	747	WP_275070914.1	type II secretion system protein N	-
M9782_RS16885 (M9782_16885)	-	3853593..3854087 (-)	495	WP_275070915.1	type II secretion system protein M	-
M9782_RS16890 (M9782_16890)	gspL	3854084..3855361 (-)	1278	WP_275070916.1	type II secretion system protein GspL	-
M9782_RS16895 (M9782_16895)	gspK	3855358..3856344 (-)	987	WP_275070917.1	type II secretion system minor pseudopilin GspK	-
M9782_RS16900 (M9782_16900)	gspJ	3856341..3856973 (-)	633	WP_275070918.1	type II secretion system minor pseudopilin GspJ	-
M9782_RS16905 (M9782_16905)	gspI	3856991..3857356 (-)	366	WP_039284733.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31289.26 Da
• Isoelectric Point: 8.1103

>NTDB_id=693457 M9782_RS16875 WP_275070913.1 3851922..3852767(-) (pilD) [Pectobacterium actinidiae strain GX-Pa1]
MDDLKEFAQLFPAWWFGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIALETGTADSVRDTRYNLWWPPSACPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQSVSVQYPLVEAIAMLVFLTAGLLWQPGMALWGALILLSFLLVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSGTFVSLNDAVVGAMAGYLSLWLLYWAFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRVLRKEDTAKPLAFGPWLAMGGVFGVIMNGFNL

Nucleotide

• Length: 846 bp

>NTDB_id=693457 M9782_RS16875 WP_275070913.1 3851922..3852767(-) (pilD) [Pectobacterium actinidiae strain GX-Pa1]
GTGGACGATTTAAAGGAATTCGCACAGCTGTTTCCGGCGTGGTGGTTTGGAGCGCTGGGTGTGTTGGGGTTGATTGTTGG
CAGTTTTCTGAACGTGGTGATTTACCGCCTGCCGATTATGCTGGAGCGTCGCTGGCGGCAGGACATCGCGCTTGAAACGG
GCACCGCCGATTCCGTGCGTGATACGCGCTACAACCTGTGGTGGCCGCCTTCGGCTTGCCCACATTGCCAGCAGGCTATT
GCGGTAAAAGATAATATCCCGCTATTCAGTTGGCTGTGGTTGCGCGGCCGCTCCCGCTGCTGCCATCAATCGGTATCTGT
GCAATATCCGCTGGTGGAGGCGATCGCCATGCTGGTTTTTCTGACGGCGGGTTTGCTCTGGCAGCCCGGTATGGCGCTGT
GGGGGGCGTTGATCTTGCTGTCCTTCCTGTTGGTGCTGACCGTTATTGATATAAAAACGCTGTTGCTGCCGGATGTGCTT
ACGCTGTCGCTTCTGTGGATGGGGCTGCTGTTTAATCTGTCGGGGACATTTGTCTCATTGAACGATGCCGTAGTTGGCGC
GATGGCCGGTTATTTATCTCTGTGGCTACTCTATTGGGCATTCAAATACGCAACGGGCAAAGAAGCGTTGGGATACGGTG
ACTTTAAGTTGCTGGCTGCGCTGGGTGCCTGGCTGGGCTGGCAGGCATTGCCAAATCTGGTTTTAGTGGCGGCGCTGAGC
GGGCTGGTTGTTACGCTTATTTGGCGCGTGTTGCGTAAAGAGGATACGGCTAAACCGCTGGCTTTTGGGCCCTGGCTGGC
GATGGGCGGCGTGTTTGGCGTGATAATGAACGGATTCAATCTGTAG

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

• Type IV leader peptidase family (Peptidase_A24) (137-245)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50	96.085	0.48
pilD	Neisseria gonorrhoeae MS11	48.837	91.815	0.448
pilD	Vibrio campbellii strain DS40M4	45.387	96.441	0.438
pilD	Acinetobacter baumannii D1279779	42.222	96.085	0.406
pilD	Acinetobacter nosocomialis M2	41.852	96.085	0.402